Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1802 ATGGATCCTCCCCTTGTTAATGAATCCTCCTTCTCCGCTGCCAATCCTTCTGCTTACAGCTTAGCCTCGATTTGGCCTTTTGGGGGAGAGCAAGGTGGGAGCGCATTGGGGCTTCGTATGGCTAATTTGGTTCAGAATCTTGGTGGGTTTCCTGAGAGCTCCACGAATCGCGACGGATCAATGGAAGAATCGACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCAACTAGTAGTGCCAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGAACCTAGCTCAACAGATGGCAAGAAGCTGGCTGAGCAAAGCCAGAAACCTGAACCACCAAAGGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATTAGTGAGAGAATGAAAATTTTGCAGGATTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATAAATCCTGGCATAGAAGGTTTTACTGTAAAAAATATCGTTAATCAATCATATGATGCAGCTGGAATATTATATGGTTCACAAGCAAGAGATTATAACCAAGGTGGACAACCTGAATGGTTACATATGCAGATTGGTGGAAGTTTTGAAAGAACGTCTTAG 828 43.6 MDPPLVNESSFSAANPSAYSLASIWPFGGEQGGSALGLRMANLVQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVESRDENGGIKAEVEPSSTDGKKLAEQSQKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNINPGIEGFTVKNIVNQSYDAAGILYGSQARDYNQGGQPEWLHMQIGGSFERTS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29118878 29121944 + CaPI482276_06g018020.1 Cam06g1802 130102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1802 275 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 59 230 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam06g1802 275 MobiDBLite consensus disorder prediction 69 84 - -
Cam06g1802 275 MobiDBLite consensus disorder prediction 47 68 - -
Cam06g1802 275 MobiDBLite consensus disorder prediction 105 144 - -
Cam06g1802 275 CDD bHLH_AtBPE_like 143 225 - -
Cam06g1802 275 FunFam Basic helix-loop-helix transcription factor 150 222 - -
Cam06g1802 275 Gene3D - 150 224 IPR036638 GO:0046983(InterPro)
Cam06g1802 275 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983(InterPro)
Cam06g1802 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 223 IPR036638 GO:0046983(InterPro)
Cam06g1802 275 MobiDBLite consensus disorder prediction 85 104 - -
Cam06g1802 275 SMART finulus 159 209 IPR011598 GO:0046983(InterPro)
Cam06g1802 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983(InterPro)
Cam06g1802 275 Coils Coil 200 220 - -
Cam06g1802 275 MobiDBLite consensus disorder prediction 47 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1802 Cam-Chr6:29118878 Cam09g0835 Cam-Chr9:8577032 2.40E-37 dispersed
Cam06g1802 Cam-Chr6:29118878 Cam08g1357 Cam-Chr8:19864043 1.20E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52197 PF00010 HLH 2.20E-08 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1802 - - - 0.0