Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1807 ATGGTGTCTGCATCGACTCGTCAGAAGAACATGCACTCCCTTCTGGTAGCCAATCTCACGAAGCTTACGATTCCTTCGTCTTCTTCTTCTTCTTCTTCTCCTCCTTCATCCGCCGCCGCCGCCGCCGTTCATGACTTTGATTTCTCCGATGTATTTGGCCCCACAAATCCCTCTCCGTCATCTTTTCCCGGGGACCCACAACACCATGAACAACAACCAGTGGTAATTCATAACAGATCTCACTCATTTGTGGGTCCTTCTCCCCGTTTAACCCCCCCAGCTTCCCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAAGAAGAAGAAGATGGCCTAGAAATCTCGACTCGCAATGGAACTCAAGAGGAGAAGAAAAGGGTGGGTGAAACTGAAAATATTGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAAGTCTTTTTGGTGAGGAAGAAAGGGAATTGTAAAGGAAACGGTTCTAACAATGATGGGATTTATGCTATGAAAGTGATGAGGAAAGATACCATCATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTACGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGGGTCTATGCAGCTGAGATCGTTTCAGCTGTTTCGCATCTTCACAACTGCGGTATTGTTCACCGTGATCTCAAGCCTGAGAACATCCTTATGGATGCTGATGGACATGTAGTGCTTACAGATTTTGGACTGGCCAAGGAAATTGATGAGTCAAGCCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGCCACAACAAAGATGCTGACTGGTGGAGTGTTGGAGTCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACATGCCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCCCCATACCTGAGCACTGAAGCTCACTCTTTACTCAGAGGGCTGCTACAAAAGGAGCCTTCTAAAAGATTAGGTAGCGGACCCAACGGAGGGGACGAGATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAATGGAAAAGACTGCACGGCAAATTTCGATCATTGTTGGACAGCGATGCCCCCAGATGACTCACCAGCTCCGACACCAACAGACGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCCTTGGCTTTCATCATCTGGATAG 1455 45.5 MVSASTRQKNMHSLLVANLTKLTIPSSSSSSSSPPSSAAAAAVHDFDFSDVFGPTNPSPSSFPGDPQHHEQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEDGLEISTRNGTQEEKKRVGETENIGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGNCKGNGSNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPNGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVNGKDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNPWLSSSG 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29158078 29160256 + CaPI482276_06g018070.1 Cam06g1807 130107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1807 484 ProSiteProfiles Protein kinase domain profile. 151 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1807 484 SMART serkin_6 151 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1807 484 MobiDBLite consensus disorder prediction 48 71 - -
Cam06g1807 484 MobiDBLite consensus disorder prediction 53 67 - -
Cam06g1807 484 CDD STKc_AGC 157 415 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Cam06g1807 484 FunFam Non-specific serine/threonine protein kinase 148 262 - -
Cam06g1807 484 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 483 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1807 484 MobiDBLite consensus disorder prediction 117 131 - -
Cam06g1807 484 PANTHER RIBOSOMAL PROTEIN S6 KINASE 113 477 - -
Cam06g1807 484 FunFam Non-specific serine/threonine protein kinase 239 434 - -
Cam06g1807 484 ProSitePatterns Protein kinases ATP-binding region signature. 157 188 IPR017441 GO:0005524(InterPro)
Cam06g1807 484 SMART pkinase_C_6 416 475 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1807 484 Pfam Protein kinase C terminal domain 436 473 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1807 484 Pfam Protein kinase domain 153 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1807 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1807 484 MobiDBLite consensus disorder prediction 102 131 - -
Cam06g1807 484 SUPERFAMILY Protein kinase-like (PK-like) 148 478 IPR011009 -
Cam06g1807 484 Gene3D Transferase(Phosphotransferase) domain 1 239 434 - -
Cam06g1807 484 Gene3D Phosphorylase Kinase; domain 1 150 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2350 Cam-Chr5:31573839 Cam06g1807 Cam-Chr6:29158078 3.10E-54 dispersed
Cam06g1807 Cam-Chr6:29158078 Cam08g2069 Cam-Chr8:26225090 1.10E-56 dispersed
Cam06g1807 Cam-Chr6:29158078 Cam02g0326 Cam-Chr2:3996590 1.70E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85285 PF00069 Pkinase 7.10E-72 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1807 K04688 - csv:101214867 874.004