Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1830 ATGCATGGGCGTCGAGGTGAGTACTGGAAACGGACTCGGCACATGTGGACAGTCCCCACACGTGGTACTCAGATCGTAGAAGCAGATGGTTCTTCGTCATCGTCTTCGTCTGCACCGAATTCGTTTTGTAAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCCAAGATTCCCCACCTTTTATTGGCATAATCCGGTGGTTGACGGCTGGTAAGGAGAATAAGTTGAAGTTAGGTGTGAATTGGCTTTATCGATCTTCTGAACTAAAGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCAAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTTCTTCCAAAGGACGTTGAACTTCCATCAGGGATTTCGTCATTTGTGTGTCGAAGAGTGTATGACATAACAAATAAGTGTTTATGGTGGCTAACCGATCAGGATTATATTAATGAGCGTCAGGAAGAAGTAGATCAATTGTTGTATAAGACAAGATTAGAAATGCATGCTTCTGTGCAACCCGGTGGTCGATCACCGAAGCCTACAAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACAACTGCCTTTCCTTCTCACACAAAAGGCAAGAAAAGAGAAAGGAGTGACCAAGGATTAGAATCTGTCAAACGAGAACGCATCATCAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATATTTTGAAGTCGGAGATTGCAAAAGTTGCTGAAAAAGGAGGCTTAGTTGATTCTGAAGCTGTGGAGAAATTGGTGCAGCTTATGCTGACAGATAGAAATGACAAAAAAATTGATTTGGCTGGCAGATCAGCACTTGCAGGTGTGATAGCTGCCACAGATAAGGTTGAGTGCCTTAGTCAGTTTGTGCATCTTAAGGGTTTACCTGTACTTGATGAATGGCTCCAAGAGGTTCACAAGGGAAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGCGACAAAGCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGTGCCCTTGATAAACTACCTGTAAATCTTCCTGCTTTACAAATGTGCAACATTGGAAAGTCTGTGAATCATTTACGCTCGCATAAGAATTTGGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGTGTTGAAGCTGAAATGAATATTAATGATGCAAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGAACTCGTCCCTCTGAAGTTTCTCATGGAGGGAGGAATCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCAGTTTCCCAGCTTTCTACATCCAAATCTGCTTCAGTTAAGCTTGCGCAGGATGACAGTGTTACAAGATCTGCATCTGCCTCTCCTGGTTCTATGAAACCAGTTTTGTCACCTGCATCAGCAAGTATTAACTCGAAAGATGGTTCTTCCAGGAATCCGGGTGTTTGTGGCACAACTGATCTTGCTCAAACTATTGCCAGGGATGAAAAGAGTAGCAGTTCCAGTCAGTCCCACAATAATAGTCAATCTTGTTCTAGTGAACATGGTAAAAGTGGTGGTTTAGGGAAGGAGGATGCAAGAAGCTCTACTGCTGGTTCAATGAGTGTGAATAAGATCTCAGGTGGTGGATCTCGCCAGCGCAAGTCAGTTAATGGGTTTCCTGGTCCTGTTCTCTCTGGTGGTCAACGGGATGTAGGGTCGGGGAAAAGTTCTTTGCATAGAAACACAGTTTTGGAGAGATCATCACAGTCTGGAATGACTTTTGAAAAGGCATCTGATGGTCCTATTGCTGAGGGAAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGCCGGAGTCCTGCACAGAGTGCTAGTGGAGGATCTTTTGAAGATCCTTCAACAATAAATAGCAGGGCTTCTTCTCCTCCACTTTCGGATAAACATGATCAACTTGATCACAGTAAGAGTGATACATGTCAACCTAATATTACTGGAGATGTGAATGCGGAGTCCTGGCAGAATAGTGATGTAAAAGATACAGTGATTGGTGCTGATGATGGTGATGGATCTCCTGCTGCTGTAAATGGTGATGAGTGCTGTCGGGCTGCAGAAGATGTAACAGTTTCAAAGGCTACTCCGTCATCATTAGCGAATGATCATAAGAATGGAAAGTTACATGAGGCTTCTTTCAGCTCCATAAATGCTTTAATTGAGAGCTGTATTAAATGCTCTGAAGCTAGTATGCCTACCTCACTCACGGATAATGTCGGAATGAATTTACTTGCTAGTGTAGCAGCTGTCGAGATGTCGAAGTCTGATTTTGTTTTGCCTTCCGATACTCAAGGAAATACGACTGCAGTGGACCGCTCTTCTAGAGGCAGTGATTATAAAGTTAAAGCATCTTGTCCTGAAGAGGATGCTAGAGATGATGTGCCGACGAATGATGCTATGGATGTTACTGAGCAGGGCGTGATCACCAGTTCCTTTGGAGGCAAAAATGTAGATGGAAGGTCTGCTTTGCAATCTGAAGAGAAACCGGTTGGAGATCTCAATGGTCATTCAAAATCTTCTGGTGTAAACTTGCAACAAACTGCTGTGGCGATGGCTGATGGGTGTATGAAAATGAACGAGGTTGGAGGCCCTGCCTCTCCCACTAGGGTACCAGAGAAGGGCTTTGAGATCAAGGGGGCTAAACCAGTCAAGGACAGAAAGACGGCTGATGTAGTAGATGGAGAGAGCAGCCCAGAATCGAAACCAAAACCAAGCAGTTCTTTTCCTGATGGTGGCATGGTTGGTGATGGTATCTCGACTCGGGAAGTTGAAATGGATGTTCTTGATGAGCCTTTGCATCGGCGGCAAGACGTTGATGGCAATACGAATAATAGACTGAATGGTATTAGTACAGCAGATCAAAGGTCATCTTCCAAGTTGAACAGTGATTCTGCTAAATTAAGGAACGATGGATTACTTCAGGCTTCAGGCTCTTCAAGTGATCTGGTTTCTGTAAATGCAAGTGGGATGAAGGGTGAGAAGGATGATGAAACCTCAGCTGATGTCAAACTTGAAAGACATCAAAGTGATTTGGATCCTATGCCTTCTGAGTCCCGAGGTTTAGGTGGCTTGTGTTCAGCTACCAACCACGAGGATGAGCATGTGGAGGAGAATTTGGAATCTAAAGAGAATACAGAGAGAAGTGGAGGACAAACACATCAAGGGCAATCTATTATTTCTACTGTCCAAGAAACCGAGCAGCCTAAGCCATCCAAGAGATCCAAATTAGCTGGTGTTGAAGCAGAAGAGGCAGAGGAGTCTACATCCACTGCCGCAGATGCTGGTTCCATGTCTGCTGTGGGGGTGTCAGATATGGATGCTAAGTTGGAATTTGATTTGAACGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGCAGCTTTACACCATCTGGTTGTTTGTCAACTGTTCAGTTAATTAGTCCGTTGCCCCTTCCTGTATCTAATGTGACAAACAACATTCCTGCTTCAATTACAGTTGCAGCTGCGGCAAAAGGAGGTTTTGTACCACCTGATGATCTATTGAGGAGTAAAGGGGAACTTGGTTGGAAAGGATCAGCAGCTACCAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTCTAGAAATGCCACTAGGTCTTGCAACCACTCCACTTGCTGATGTTGCAGTCAGTAAAATTTCTCGACCCCCACTGGATATTGACTTGAATGTTCCTGATGAAAGGATTCTTGAGGATATGAATGCTCAGATGTCTACTCAGGAGGTGGCTTCTAAGTCTGACCTGGCTAATAATCGTGATCTGGCACATGGACGTTGTTCTGGAGGACTAGATCTTGACTTGAACCGAGTTGATGATGCTCCTGATCCAAGCAACTTCTCCTTGAACAATTGTCGTAGAATAGATACTCCTCTTAGTGTTAAATCATCTACTGTTCCTCTCAATGACAAGGTGAATTTTCGTAGGGACTTTGATTTAAATGGACCTATTGTTGATGAGGCCACTACTGAACCATCAATATTTCCTCAGCATGCCAGAAGCAGTATGCCATCCCAGGCATCTGTTTCTGGCCTTTGGATGAACAATGCAGAAATGGGAAATTTTCCATCATGGTTTCCTCCAGGGAATGCCTATTCAGCTGTTGCAATTCCATCAATTTTGCCTGATAGAGCAGAACAGTCTTTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAGCCCTGATGTCTTTAGAGGGCCAGTATTATCATCGTCTCCGGCAGTGCCATTTCCTTCTGCAACTTTTCAATATCCTGTCCTGTCTTTTGGAAACAGCTTCCCTCTACCTTCAGCCACGTTTTCAGGTAACACAACAGCATACGTTGATTCATCATCTGGTGGCAGGCTTTGCTTCCCAGCAGTCCCTTCACAGTTCTTAGGTCCTCCCGGTACAGTTTCAACCCCTTATCCAAGACCTTATGTTGTCAGTCACTCAGATGGCGGCAACAATACTAGTTCTGATAGTAGTCGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCTGGTCCTGTAGTTCCAGACATTGAAGGAAGAGAGGAATCATCATCCTTGGTACCAAGGCAACTATCTGTTGCCGGTTCGCAGGCCACTGCCGAAGAGCATATGAGGGTTTACCAGCCAGCAATTGGCATAATGAAGAGAAAGGAGCCAGAGGGAGGATGGGATGGGTACAAACAGTCATCATGGTAG 4866 44.45 MHGRRGEYWKRTRHMWTVPTRGTQIVEADGSSSSSSSAPNSFCKGGRRISVGDCALFKPPQDSPPFIGIIRWLTAGKENKLKLGVNWLYRSSELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGISSFVCRRVYDITNKCLWWLTDQDYINERQEEVDQLLYKTRLEMHASVQPGGRSPKPTSGPTSTSQLKANSDSVQTTAFPSHTKGKKRERSDQGLESVKRERIIKADEGDSANCRLENILKSEIAKVAEKGGLVDSEAVEKLVQLMLTDRNDKKIDLAGRSALAGVIAATDKVECLSQFVHLKGLPVLDEWLQEVHKGKIGSGGSPKDSDKAVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRPSEVSHGGRNQDASSEVAMKSSVSQLSTSKSASVKLAQDDSVTRSASASPGSMKPVLSPASASINSKDGSSRNPGVCGTTDLAQTIARDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGPVLSGGQRDVGSGKSSLHRNTVLERSSQSGMTFEKASDGPIAEGNSPKLIVKITNRGRSPAQSASGGSFEDPSTINSRASSPPLSDKHDQLDHSKSDTCQPNITGDVNAESWQNSDVKDTVIGADDGDGSPAAVNGDECCRAAEDVTVSKATPSSLANDHKNGKLHEASFSSINALIESCIKCSEASMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNTTAVDRSSRGSDYKVKASCPEEDARDDVPTNDAMDVTEQGVITSSFGGKNVDGRSALQSEEKPVGDLNGHSKSSGVNLQQTAVAMADGCMKMNEVGGPASPTRVPEKGFEIKGAKPVKDRKTADVVDGESSPESKPKPSSSFPDGGMVGDGISTREVEMDVLDEPLHRRQDVDGNTNNRLNGISTADQRSSSKLNSDSAKLRNDGLLQASGSSSDLVSVNASGMKGEKDDETSADVKLERHQSDLDPMPSESRGLGGLCSATNHEDEHVEENLESKENTERSGGQTHQGQSIISTVQETEQPKPSKRSKLAGVEAEEAEESTSTAADAGSMSAVGVSDMDAKLEFDLNEGFNVDDGKCSEPSSFTPSGCLSTVQLISPLPLPVSNVTNNIPASITVAAAAKGGFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGLATTPLADVAVSKISRPPLDIDLNVPDERILEDMNAQMSTQEVASKSDLANNRDLAHGRCSGGLDLDLNRVDDAPDPSNFSLNNCRRIDTPLSVKSSTVPLNDKVNFRRDFDLNGPIVDEATTEPSIFPQHARSSMPSQASVSGLWMNNAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQSFPVVATNGPPRILGPTSGSSPYSPDVFRGPVLSSSPAVPFPSATFQYPVLSFGNSFPLPSATFSGNTTAYVDSSSGGRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGNNTSSDSSRKWGRQGLDLNAGPVVPDIEGREESSSLVPRQLSVAGSQATAEEHMRVYQPAIGIMKRKEPEGGWDGYKQSSW 1621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29337584 29343535 + CaPI482276_06g018300.1 Cam06g1830 130130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1830 1621 ProSiteProfiles BAH domain profile. 47 162 IPR001025 GO:0003682(InterPro)
Cam06g1830 1621 Pfam BAH domain 49 156 IPR001025 GO:0003682(InterPro)
Cam06g1830 1621 SMART TFS2_5 333 412 IPR003617 GO:0005634(InterPro)
Cam06g1830 1621 Gene3D - 34 259 IPR043151 -
Cam06g1830 1621 SMART BAH_4 47 162 IPR001025 GO:0003682(InterPro)
Cam06g1830 1621 CDD TFIIS_I 335 411 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 1108 1122 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 981 1026 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 900 957 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 1030 1053 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 842 858 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 1536 1552 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 417 544 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 193 222 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 1534 1589 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 803 881 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 971 1137 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 592 617 - -
Cam06g1830 1621 ProSiteProfiles TFIIS N-terminal domain profile. 327 413 IPR017923 -
Cam06g1830 1621 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 315 424 IPR035441 -
Cam06g1830 1621 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 276 414 IPR035441 -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 1088 1107 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 679 696 - -
Cam06g1830 1621 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1621 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 416 696 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 556 575 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 639 667 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 223 240 - -
Cam06g1830 1621 Pfam TFIIS helical bundle-like domain 361 410 IPR017923 -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 815 838 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 187 240 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 914 937 - -
Cam06g1830 1621 MobiDBLite consensus disorder prediction 1069 1087 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1830 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1991 Cam-Chr5:28719509 Cam06g1830 Cam-Chr6:29337584 3.10E-14 dispersed
Cam01g0272 Cam-Chr1:3034928 Cam06g1830 Cam-Chr6:29337584 6.50E-22 transposed
Cam10g1228 Cam-Chr10:25667562 Cam06g1830 Cam-Chr6:29337584 6.30E-266 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52202 PF01426 BAH 2.10E-08 No_clan Cam TR