Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1838 ATGGCTGCTCGTAGAGGAATCTGTTCTTTACTCTCTCGTTCTCTCTTATCTTCTTCCTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTATGGGTTTAGTTCTTTTCTTCAATCTCATGGAAGAGTTTCAAGGTTCCAAAGAAGAGGGAATAGATTTAGCACATCTGCTTTGGCAGAGGAGGAACTCATCACTCCTCCTGTTCAGATCAATTACACTCAAAATCTGATTAATGGGCAGTTTGTAGATGCTGCATCAGGAAAAACGTTTCCGACTTACGATCCTCGCACTGGGGAAGTGATTGCTCATGTTGCCGAGGCTGATGCCGAGGATATTAACCGTGCGGTATCAGCAGCTCGAAAGGCATTTGACGAGGGGCCATGGCCGAGAATGACTGCTTATGAACGATCAAGGATATTACTGCGGTGTGCAGATTTGATTGAGAAACATATGTCTGAACTTGCAGCATTGGAAACATGGAACAATGGGAAACCTTACGAACAATCAGTTAAATCTGAATTACCGTTACTCGTGCGCTTGTTTCACTATTACGCTGGCTGGGCAGACAAAATCCATGGCTTAACAGTTCCAGCTGATGGAAATCATCATGTGCAAGTATTACATGAACCAATTGGAGTAGCAGGACAGATAATTCCATGGAACTTTCCTCTCATTATGTTTGCTTGGAAAGTTGGTCCTGCTTTAGCCTGTGGCAACACTGTTGTCCTAAAGACTGCAGAGCAAACACCTCTGACTGCTCTTTATGTCGCTAAGTTATTCCACGAGGCTGGTCTTCCTCCAGGGGTTCTAAATGTCGTTTCGGGCTATGGTCCGACGGCCGGTGCTGCGCTTGCTAGCCATATGGATGTGGACAAGTTAGCTTTCACCGGATCAACGAGCACAGGAAAAGTCGTACTTGAATTGGCAGCGAAAAGCAATTTGAAGCCAGTGACACTAGAGCTTGGAGGGAAATCACCTTTCATTGTTTGTGAGGATGCAGATGTTGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGTTGTGCCGGATCTCGTACTTTTGTTCATGAGCGTGTATACGATGAATTTGTCGAAAAATCAAGGGTACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATTGACTCGGAGCAATTCGAAAAAGTCCTAAGATACATCAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGTGGTGGTAGACTTGGGTCCAAGGGATACTTCATCGAGCCAACAGTTTTCTCAAATGTTAAGGATGATATGTTGATAGCGAAAGATGAAATCTTTGGTCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTAATTCAAAGGGCAAACTCTACTCGTTACGGTCTAGCTTCGGGAGTTTTCACATCGAACATTGACACAGCCAACACGCTAACACGAGGATTGAGAACGGGAACCGTGTGGCTCAATTGCTTTGACATCTTCGACGCTGCAATACCTTTTGGTGGGTATAAAATGAGTGGAATAGGAAGGGAGAAGGGAATTTACAGCCTCCAAAGCTACTTGCAAGTAAAAGCTGTTGTTACACCTCTCAAGAATCCAGCATGGTTGTGA 1662 44.28 MAARRGICSLLSRSLLSSSSASSSSSSSSAYGFSSFLQSHGRVSRFQRRGNRFSTSALAEEELITPPVQINYTQNLINGQFVDAASGKTFPTYDPRTGEVIAHVAEADAEDINRAVSAARKAFDEGPWPRMTAYERSRILLRCADLIEKHMSELAALETWNNGKPYEQSVKSELPLLVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKSRVRAQRRVVGDPFKKGVEQGPQIDSEQFEKVLRYIKSGIESDATLECGGGRLGSKGYFIEPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANSTRYGLASGVFTSNIDTANTLTRGLRTGTVWLNCFDIFDAAIPFGGYKMSGIGREKGIYSLQSYLQVKAVVTPLKNPAWL 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29414919 29418099 + CaPI482276_06g018380.1 Cam06g1838 130138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1838 553 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 347 358 IPR016160 GO:0016491(InterPro)
Cam06g1838 553 FunFam Aldehyde dehydrogenase, putative 515 541 - -
Cam06g1838 553 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 319 326 IPR029510 GO:0016491(InterPro)
Cam06g1838 553 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 51 545 - GO:0004029(PANTHER)
Cam06g1838 553 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 325 514 IPR016163 GO:0016620(InterPro)
Cam06g1838 553 FunFam Mitochondrial aldehyde dehydrogenase 2 325 514 - -
Cam06g1838 553 Pfam Aldehyde dehydrogenase family 81 543 IPR015590 GO:0016491(InterPro)
Cam06g1838 553 SUPERFAMILY ALDH-like 69 547 IPR016161 GO:0016491(InterPro)
Cam06g1838 553 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 77 345 - -
Cam06g1838 553 CDD ALDH_F2BC 70 545 - -
Cam06g1838 553 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 87 543 IPR016162 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1838 K00128 - - csv:101209430 1006.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1724 Cam-Chr2:30338890 Cam06g1838 Cam-Chr6:29414919 1.10E-246 dispersed
Cam02g1941 Cam-Chr2:32500975 Cam06g1838 Cam-Chr6:29414919 3.30E-79 dispersed
Cam06g1135 Cam-Chr6:21464987 Cam06g1838 Cam-Chr6:29414919 2.90E-161 dispersed
Cam06g1817 Cam-Chr6:29227162 Cam06g1838 Cam-Chr6:29414919 1.40E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g722 . . . . Bpe12g00589 . . . . . . Cma11g00104 . Car11g00103 Sed12g1882 . Cpe04g01548 Bhi02g00432 Tan09g2233 Cmetu05g1877 . Hepe09g0192 . . Cla06g01654 Cam06g1838 Cec06g1889 Cco06g1894 Clacu06g1798 Cmu06g1740 Cre06g2558 . . Cone13ag0133 . . . . . . . . . . . . . . . Cmo11g00105 . . . . . . . . . . . . . . . . . . . . Lsi06g01544 Csa01g00160 Chy02g02570 Cme02g01959
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1135 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.4 3.9e-211 731.1
Cam02g1724 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cam06g1838 . 69 553 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.4e-154 542.0
Cam06g1838 . 1 553 Aldehyde Dehydrogenase Gene Family AT3G48000 75.8 2.7e-250 861.3
Cam02g1724 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 6.2e-247 850.1
Cam06g1135 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 8.9e-161 563.9
Cam02g1724 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 3.6e-170 594.7
Cam06g1838 . 48 397 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 2.7e-165 578.6
Cam06g1135 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.1e-102 370.5
Cam11g1604 . 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 63.9 1.6e-181 632.9
Cam11g1605 . 7 574 Aldehyde Dehydrogenase Gene Family AT4G34240 53.2 2.7e-165 578.9
Cam11g1604 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 6.3e-178 620.5
Cam11g1605 . 157 572 Aldehyde Dehydrogenase Gene Family AT1G44170 71.4 7.0e-177 617.1
Cam02g2404 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.6e-117 419.9
Cam07g0921 . 84 498 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 6.9e-116 414.5
Cam07g0921 . 27 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.6 2.3e-184 642.1
Cam02g2404 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 3.4e-159 558.5
Cam02g1941 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.7 1.4e-214 742.7
Cam09g1553 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.3e-240 829.3
Cam01g1872 . 197 631 Aldehyde Dehydrogenase Gene Family AT2G14170 67.8 1.1e-180 630.2
Cam06g1817 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 6.6e-251 863.2
Cam06g1817 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 2.2e-254 874.8
Cam02g1764 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 7.1e-269 922.9
Cam01g1495 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.2 2.1e-261 898.3
Cam06g0457 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.4e-276 948.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001596 2 4 2 1 4 2 3 2 2 1 2 2 3 1 2 3 2 3 3 2 2 3 2 2 2 2 2 2 3 5 71