Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1842 ATGGCTGCTCGAGGTGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCTATCAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATCGTGGTTGATTATACTACTGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGTTGGCAGCAGAGGTACGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCGCTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCACAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCAGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTGCATACCATCCTGGACTTTACTTGACTCCCGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGTTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCAAGATGTCGGTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCCGACACTGATAGGCCATCTGCAAGTGTTGTTACAGCCAACCGTTATATGAGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAATGCTGATGCGCATGGTGATTTAGAGTCTGGTAGTGGTTTGGAAGCCGCTGAGAATGGGTCTGCCCATGACACCACTGTTCTGGAGACGGAACGGTCTCCCGTGAGACCCATGTCTTTGACCGCCTGTGAAGGAAGATTGGGCACGTGCTTTTTGGAGAATTTGATCTTGCGATACCACTGGAGAATCCTCTATTTTGACAGGTGGGGTCATAAATTATTGGAAAATGTCTCTGGTTCAATGCACACTTCATTCTCCACCAGGAATGTGGCAATGACCGAGTGGAGCAGCCTTTACGAACGAATGTGGTAA 1308 46.64 MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDTDRPSASVVTANRYMRSQPSSQSYLVRLQGLLRPVRTENADAHGDLESGSGLEAAENGSAHDTTVLETERSPVRPMSLTACEGRLGTCFLENLILRYHWRILYFDRWGHKLLENVSGSMHTSFSTRNVAMTEWSSLYERMW 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29442595 29447045 + CaPI482276_06g018420.1 Cam06g1842 130142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1842 435 SUPERFAMILY RING/U-box 216 284 - -
Cam06g1842 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cam06g1842 435 MobiDBLite consensus disorder prediction 336 358 - -
Cam06g1842 435 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Cam06g1842 435 Pfam Ring finger domain 234 276 IPR001841 -
Cam06g1842 435 SMART ring_2 235 275 IPR001841 -
Cam06g1842 435 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cam06g1842 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 357 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1842 Cam-Chr6:29442595 Cam10g0647 Cam-Chr10:10101068 3.40E-09 dispersed
Cam01g1436 Cam-Chr1:27915425 Cam06g1842 Cam-Chr6:29442595 1.40E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1842 K16284 - csv:101208939 736.102