Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1845 ATGTGTAATAAAGGAAGCTTTTCGAAACAGAAAAAAATGCGAAAATCGGCAGTTGCAATTGCAGCGGTCGCCGGTGGGAGAGAGGTCGCGATTCTGCGTTCTCTGCTGATTTTGAACAATTGTGAGATGCCGGGAATTGTCATGGATGAAATCAATGAAGAAAGGGCTGTGAATAAACACAACGGTTCTTCGATTCATATGGAAGAGTCGTATGGAAACAAGTCGCCGAGGAGCGGGTTGAGTGTTCAGAGCCATGGAAGTGTTCATGTTGATTTCCCTGTTGATGGCTTGGTCGATACCTCTATTGAGAAGCTTTATGAGAATGTTTGTGATATGCAAAGTTCGGATCAGTCACCTTCAAGGCATAGCTTTGGCTCTGATGGTGAGGAATCAAGGATTGATTCTGAACTGAATCATCTTGTTGGAGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAAGATATTGTTGAGAAGCCTGAACATGATTTTCCTAGTGATTCTATGAATCAATCACCATCTGCAGATAAGAAGGAGAAGGCTGAAAATACCCAACCTGGAAGCTCAAAACGTCTTTCTTCTGGAAAAAAAGCTCCTCACCTGCAATTGGACCATGAGACATCTCCAAAATCAAGTCCCAGGGGCAAGGGTTTGTTGGATAAACCCCCTATTAGCAGAAAGAATGAAAAGAATTTGAAAAAAAATAGTCCAGTTGCTGCTCAATTAAAGAAGCAGAAAGATTCACCTTTGAGGGGCTCAAAAATGCAGAATGGAATTGAGGATTTCGATGAATCAATGATGGATAATCCTGATCTAGGACCCTATCTACTTAAGCAAGCAAGGAATTTAGTTTCCTCAGGGGAGAATCTGCAGAAAGCTCTTTTAATAGCACTTCGTGCTGCAAAATCTTTTGAACTATCTGCAAATGGGAAACCCAACTTAGAACTTGTTATGTGTTTGCACGTCACAGCAGCAATATACTGCAGCTTAGGCCAGTACAGTGAGGCAATACCTCTATTGGAGCATTCCATCGAGATTCCTGCCATCAAGGAAGGGCATGAGCATGCACTGGCCAAATTTGCAGGGCACATGCAATTGGGTGATACCTATGCAATGCTGGGCCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGGTTAGAGGTGCAGAAACAAGTCCTAGGAGAAGCAGACCCCAGAGTTGGTGAGACCTATAGGTATTTAGCTGAAGCTCATGTTCAAGCTTTGCGATTTGATGAGGCTGAGAAATTTTGTCAAATGGCACTCGATATTCACAAAAAGAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGCCTCATATGTGAAACAAAAGGAGATCATGAAGCTGCGCTCGAGCATCTAGTTTTAGCCAGCATGGCCATGGTGGCAAATGGCCAAGAGACTGATGTGGCTGCAGTTGATTGCAGCATTGGAGATTCATACTTATCCTTGTCCCGCTACGACGAGGCTGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAAACCACTAAGGGAGAAAACCATCCAGCAGTTGGTTCAGTATATGTTCGTCTTGCTGATTTATACAACAAGACTGGAAAAATGAGGGAGTCAGTATCGTACTGTGAAAATGCCCTTCGAATTTATGAAAAGCCTGTCCCAGGGATTCCTCCAGAGGAGATTGCTAGTGGTCTTACTGATATTGCAGCTATTTATGAATCAATGAATGATGTTGAGCAAGCAGTCAAATTATTACACAGGGCATTGAAGATATATAATGATGCCCCGGGACAGCAAAACACCATTGCTGGAATAGAAGCCCAGATGGGTGTCTTGTATTATATGTTGGGGAACTATTCTGAATCTTACGACTCCTTCAACAATGCGATTCCAAAGCTTCGCAACAGTGGAGAGAAAAAATCTGCTTTCTTTGGTATAGCCCTTAATCAAATGGGTCTCGTGTGTGTTCAGAAATACGCTATAAATGAAGCTGTGGAGTTATTTGAAGAAGCCAAGAGCATACTAGAGCAAGAATATGGACCTTATCATCCTGATACTCTCGGGGTATACAGCAACCTTGCTGGAACATACGATGCAATTGGCAGGTTAGATGATGCAATTGAAATTTTGGAGTATGTTGTTGGCATGCGGGAGGAAAAACTTGGGACAGCCAATCCCGATGTCGATGATGAGAAGAGGAGGTTGTCTGAGTTGTTGAAAGAAGCAGGTAGAGTTCGGAGCCGAAAGGCGAGATCACTCGAGACTCTTCTCGATGCCAATGCTCATCCTGTAAACAGTAAAGTTTTGAATGAAAACTACAAGGATGAGATAGGTTTCTTCCACTCACCATTCTTCCGATCGCCGACTGCAAGTACAAGATATCGTGTATTTGTATCTGCAACTATGGTTGAAAAACCTTCTAGTTCGTCATCTACTCTTGTAGATCAGCCAGTTGTTCCAGGAGACGTGGTTCTCGACCTCTCGAACATGGCCAACGAGACAATCAAGCTTGGAGGCGGTCTTCGACAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAACTGAGGTTCTCTAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTTCTTGGAATCGTGCTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCATTGGCCGTTCTTCCTGTTCTTGCATTTGAAGGAGGAACTAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTGAACCCTGGTATGAATCCTGAGTTGGCATGTACAGATGCGAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCCGCATGTCCAGTTCTTGAATCTCTTGGAAAGAAGCTTTCATTCGAGATAGCAGTTGGTTTAAATGGCCGAGTTTGGGTCAATTCAGATTCTCCGTCCACAACCATTGTTGTTTCAAATGCAATATTGAACTCCGAGACTCTGTCTGGGGTTCAACAGAGAATCATGGTGGACAAACTCCTTAACAATTTAAAGCTGTCAAAAGGGGCTCCCATGGCGGCAACCCAATCTGCTCCTCCTTCTTCGAATGACGATAACTCCCAGAATTCAGCTCCAGCTCCAGCTCCTGCACGAGCTACGATCGAGGATCATGGAGATGCGAAGGCGGAGGTTGAGAAGCAAACCTCTCCACCATCGGTGTTTGTGAACTCTGAACCAATGAGAGAGGATCAAGTGCAAAATGCTGTGAAATTTCTTCAACACCCTAGAGTAAGAGGCTCTCCTGTTGTCTATAGACGATCGTTTTTAGAAAGAAAGGGTCTTACAAAGGAAGAGATTGATGAAGCATTCAGGCGTGTGCCCGACCCGCCTTCTAATGCTCAGACTGCTACTGTGAGTCAAGATGGACAGGTGAACACAGTTCAACCACAACCCTTGACACAATCTCTTCAACCAGTTGCTGCTGCCACTCCTCTTGCTGGTGGTGAATCTCGTGTGGGTACTGTTGCACGGTCTAGATTCCATTGGTCACATGCCATTCTCGCAATAGGTGTACTGGCCGTTTCAGGTGCTGGAACAGTTGTAGTATTCAAGAATTCTATTATTCCTAGGTTAAAATCTTGGGTGCGTAAAGTTGTATTAGAAGATGATGACGTTGAGAAGAAAATAAATTTAAAACCAAGTGCAGCAGAGGAAGCAGCTGCTGCTGCCAAAGCAGCAGCAGCAGCAGCATCTGATGTGGCAAAGGCGAGCCAAGAGATGCTGTTTTCTAAAAATGAAGAGAAAAAGAAGTTTGAGGACTGTGTCGACTTGTTGAATGCTCAGCTTGGGCAGATGAAGTTGATGCTGAAGGCCATTCAGAATTTGGAAGCAACCACGTATGGAAGAACTACTACCGTTGATCAAGAAGATTATCGAATTACTCCCATGAGTTCAAAGCAGCCATATTCCAATGGCAAGTTGGACCCTAGCTTCCAGTCAGCTACACCTGCCACCCCTGTTGAACCCTCCGTTGCACCGCATCCCAAGTCTTACATGGAGATCATGGCCATGGTCCAGAGAGGAGAAAAGCCATCTAATATTAGAGACATAGACGATTTACCTCCCAACCCAAATCAACAGCCATCAAATCCTCGCCTAGCTCCTAGAGCCAAGCCTTGGGAGGTTGGTACGCAAAACAATCCTGCCTTTTTCCCTCAGTCTCAAGATGATGCTGGTTTGAATTCCTTGGTACAAAACAATGGTTTGACTTACGAGAACGATAACCCTTCAGTGCCTTGGTGGCAGAAGAGAAATGTTAATATTACTGAGATCGACAATAATGAGTTGAAAGTAGGCTCTTCCAATGGTCTCTCTGCTGAGAAACCAGTTCAACGTGCATGGGTTCCTCCTCAGCCACCACCTGTCGCATTGCCAGAAGCTGCCGAAGCCATCCGAAGGCCAAAACCAACTATCCAGAAAGAGCAGTTTACTGACGAACAGTTAGCAACACAACCAAATGTAACTGATGAGTTGCAGAAAGCCACAAAAATTTCTGAATCTGGGGGAGCAATCGATTATGAGAACTTGGGAGTGAGCTCAAGTGAGATACAAGTGGAAGATAGCAGCTCTGGAGGACAATGA 4734 44.55 MCNKGSFSKQKKMRKSAVAIAAVAGGREVAILRSLLILNNCEMPGIVMDEINEERAVNKHNGSSIHMEESYGNKSPRSGLSVQSHGSVHVDFPVDGLVDTSIEKLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEDIVEKPEHDFPSDSMNQSPSADKKEKAENTQPGSSKRLSSGKKAPHLQLDHETSPKSSPRGKGLLDKPPISRKNEKNLKKNSPVAAQLKKQKDSPLRGSKMQNGIEDFDESMMDNPDLGPYLLKQARNLVSSGENLQKALLIALRAAKSFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAIPLLEHSIEIPAIKEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGEADPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVYVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNDVEQAVKLLHRALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYDSFNNAIPKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDANAHPVNSKVLNENYKDEIGFFHSPFFRSPTASTRYRVFVSATMVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAVLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPACPVLESLGKKLSFEIAVGLNGRVWVNSDSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSKGAPMAATQSAPPSSNDDNSQNSAPAPAPARATIEDHGDAKAEVEKQTSPPSVFVNSEPMREDQVQNAVKFLQHPRVRGSPVVYRRSFLERKGLTKEEIDEAFRRVPDPPSNAQTATVSQDGQVNTVQPQPLTQSLQPVAAATPLAGGESRVGTVARSRFHWSHAILAIGVLAVSGAGTVVVFKNSIIPRLKSWVRKVVLEDDDVEKKINLKPSAAEEAAAAAKAAAAAASDVAKASQEMLFSKNEEKKKFEDCVDLLNAQLGQMKLMLKAIQNLEATTYGRTTTVDQEDYRITPMSSKQPYSNGKLDPSFQSATPATPVEPSVAPHPKSYMEIMAMVQRGEKPSNIRDIDDLPPNPNQQPSNPRLAPRAKPWEVGTQNNPAFFPQSQDDAGLNSLVQNNGLTYENDNPSVPWWQKRNVNITEIDNNELKVGSSNGLSAEKPVQRAWVPPQPPPVALPEAAEAIRRPKPTIQKEQFTDEQLATQPNVTDELQKATKISESGGAIDYENLGVSSSEIQVEDSSSGGQ 1577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29470773 29485349 + CaPI482276_06g018450.1 Cam06g1845 130145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1845 1577 MobiDBLite consensus disorder prediction 123 166 - -
Cam06g1845 1577 Gene3D - 816 882 - -
Cam06g1845 1577 Pfam Pex14 N-terminal domain 1112 1156 IPR006785 -
Cam06g1845 1577 Gene3D - 1104 1170 IPR036388 -
Cam06g1845 1577 FunFam Exosome complex exonuclease RRP40 817 882 - -
Cam06g1845 1577 SUPERFAMILY Ribosomal L27 protein-like 818 879 - -
Cam06g1845 1577 Pfam Exosome complex component RRP40, S1 domain 881 963 - -
Cam06g1845 1577 Coils Coil 736 756 - -
Cam06g1845 1577 SUPERFAMILY TPR-like 271 730 IPR011990 GO:0005515(InterPro)
Cam06g1845 1577 Gene3D Tetratricopeptide repeat domain 470 652 IPR011990 GO:0005515(InterPro)
Cam06g1845 1577 FunFam exosome complex component RRP40 964 1047 - -
Cam06g1845 1577 SMART tpr_5 361 394 IPR019734 GO:0005515(InterPro)
Cam06g1845 1577 SMART tpr_5 485 518 IPR019734 GO:0005515(InterPro)
Cam06g1845 1577 SMART tpr_5 527 560 IPR019734 GO:0005515(InterPro)
Cam06g1845 1577 SMART tpr_5 695 728 IPR019734 GO:0005515(InterPro)
Cam06g1845 1577 SMART tpr_5 318 351 IPR019734 GO:0005515(InterPro)
Cam06g1845 1577 SMART tpr_5 570 603 IPR019734 GO:0005515(InterPro)
Cam06g1845 1577 SMART tpr_5 611 644 IPR019734 GO:0005515(InterPro)
Cam06g1845 1577 SMART tpr_5 653 686 IPR019734 GO:0005515(InterPro)
Cam06g1845 1577 SMART tpr_5 403 436 IPR019734 GO:0005515(InterPro)
Cam06g1845 1577 MobiDBLite consensus disorder prediction 112 257 - -
Cam06g1845 1577 Pfam Family of unknown function (DUF5572) 1377 1425 - -
Cam06g1845 1577 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515(InterPro)
Cam06g1845 1577 Gene3D Tetratricopeptide repeat domain 313 469 IPR011990 GO:0005515(InterPro)
Cam06g1845 1577 ProSiteProfiles TPR repeat profile. 570 603 IPR019734 GO:0005515(InterPro)
Cam06g1845 1577 Pfam KH domain 968 1016 IPR004088 GO:0003723(InterPro)
Cam06g1845 1577 CDD KH-I_Rrp40 967 1045 IPR049469 -
Cam06g1845 1577 Gene3D Tetratricopeptide repeat domain 664 770 IPR011990 GO:0005515(InterPro)
Cam06g1845 1577 MobiDBLite consensus disorder prediction 1396 1420 - -
Cam06g1845 1577 Gene3D - 887 963 IPR012340 -
Cam06g1845 1577 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 43 771 - -
Cam06g1845 1577 MobiDBLite consensus disorder prediction 1058 1078 - -
Cam06g1845 1577 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 967 1049 IPR036612 GO:0003723(InterPro)
Cam06g1845 1577 MobiDBLite consensus disorder prediction 1055 1110 - -
Cam06g1845 1577 CDD S1_Rrp40 880 965 IPR037319 GO:0003723(InterPro)
Cam06g1845 1577 Pfam Tetratricopeptide repeat 418 468 - -
Cam06g1845 1577 Pfam Tetratricopeptide repeat 483 559 - -
Cam06g1845 1577 Pfam Tetratricopeptide repeat 655 721 - -
Cam06g1845 1577 FunFam Peroxisomal membrane protein PEX14 1104 1166 - -
Cam06g1845 1577 SUPERFAMILY Nucleic acid-binding proteins 879 971 IPR012340 -
Cam06g1845 1577 MobiDBLite consensus disorder prediction 198 212 - -
Cam06g1845 1577 MobiDBLite consensus disorder prediction 1346 1376 - -
Cam06g1845 1577 FunFam Exosome complex component RRP40 883 963 - -
Cam06g1845 1577 MobiDBLite consensus disorder prediction 1346 1370 - -
Cam06g1845 1577 Pfam Peroxisomal membrane protein PEX14-like, central 1209 1327 IPR054154 -
Cam06g1845 1577 Gene3D K Homology domain, type 1 964 1047 IPR036612 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1845 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1845 Cam-Chr6:29470773 Cam07g1422 Cam-Chr7:28793428 7.80E-197 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48