Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1854 ATGGCTCACAGTCACAGTACCAGTACCACAGCCTACGCCCTACCCCTCTCTCTCTCTACGCCCCTAAATAATTCTTCCATTTTTCTCTCTCCGCTGTCGACCATGGCGGATCTTTACGGACTCCATCCCCTCGCTGATAACTCTTACCAGTCATCTTCAGCGACGACGTTGGGTAGCTTTCCTCTTCTTGCTAATTCTCCAATGGCTTCTGCAGATTATTCTCATCTACTTCCTGCTTTTGAATCGGAATATTTGCGGACGGTTTCGTCGGCCGCCTGCGACACCGTTGCGGCGGCGGCTGAGATTGAAACAGCGCGAGCTAATTCCGAGTACTCCGCCGGTGTAATTCGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAACTCGTCGATGCGTTCGTGAACTGCCAAAAGGTCGGTGTACCGCCGGAGTTCGCTGATATTCCAGACCAAAACAACCGTGGAAGTGATATCGGCGAAGAAATTTCCGGCGTTTCAAATTGCTTGGGTGTCGATCCCGAACTCGATGAGTTCATGGAAACATACTACAGGATACTAGCCAAATACGAGTTAGATCTCTCCCAGTCCTTCATGGAAGCATCTTCCTTTCTCAACAACATGGGAATGCAGTTAAACGTGCTTTGCAATAACGTCAAATTAGGCCATGATCTCAGTGCAAATCTTGACCTGAAACAATATTTATGCCTGCTCTTGCCCCACCCAAGATCTCAGAAATTGTTAGCAGTTGAGTTGCCATCATAA 762 48.03 MAHSHSTSTTAYALPLSLSTPLNNSSIFLSPLSTMADLYGLHPLADNSYQSSSATTLGSFPLLANSPMASADYSHLLPAFESEYLRTVSSAACDTVAAAAEIETARANSEYSAGVIRAKIASHPLYPKLVDAFVNCQKVGVPPEFADIPDQNNRGSDIGEEISGVSNCLGVDPELDEFMETYYRILAKYELDLSQSFMEASSFLNNMGMQLNVLCNNVKLGHDLSANLDLKQYLCLLLPHPRSQKLLAVELPS 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29610541 29613615 + CaPI482276_06g018540.1 Cam06g1854 130154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1854 253 PANTHER FUSED COMPOUND LEAF 1 103 220 - -
Cam06g1854 253 Pfam KNOX1 domain 116 147 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam06g1854 253 SMART KNOX1_2 114 158 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam06g1854 253 SMART KNOX2_2 165 216 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam06g1854 253 Pfam KNOX2 domain 169 215 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1854 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2746 Cam-Chr5:34728066 Cam06g1854 Cam-Chr6:29610541 8.90E-31 wgd
Cam06g1854 Cam-Chr6:29610541 Cam08g2252 Cam-Chr8:27655089 3.70E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g773 . . . Bda15g00550 . . . . . . . . . Car11g00082 . . Cpe04g01564 . . . . . . . Cla06g01668 Cam06g1854 . . . Cmu06g1753 . . . . . . . . . . . . . . . . Bma08g00095 . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01561 Csa01g00143 . Cme02g01983
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000818 2 3 3 3 3 3 4 2 2 3 3 2 3 2 3 3 4 4 4 3 3 3 2 4 4 3 3 3 3 3 90