Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1857 ATGTTAGTGGACCCTCGGATGGCTTTTGCTTTTCACCAGCCCTTGTTCTTTTCGCCCGCGCCAGATGAAACTGCTCCGAAAGAGAATATAAGCGCCGGAGAAGTAGAATTACAAGACTCTCTTGTGGTTCCGGGAAATGAAGATCGCGAGCTGAAGGATCGACTTTTGCGGGAGTACGGTGGTCATATTAGTAGCTTAAAGCAGGAATTCTCAAAAACTAAAAAGAAGGCAAATCTGCCGAGAGAAGCCAAACAGATCCTGCTTCACTGGTGGAACAGCCATTCCCAGTGGCCATATCCCACTGACACAGAAAAAGTTGAGTTGGCCGAGTCGACAGGCCTAACCCGAAAACAAATAAACAACTGGTCAGGCATCGACGTTGATATGACTGTAGGAAACGATTCATTATGCGCTCCTCTTGAATGGAAGTTCTCTCAGGTCTTCGGTGAACGAGTTGCCGGAGAGGATATTCAGGATGTTGATATCATATCAGCGATTGGATTCGATAAGACTGGTGACAACCTTGCCATTGGGGACCGAGGTGGTCGTGTTATTATATTTGAGAGAAGGGACGGGAAGGATACTTCAAAAAACTACCCTACACGGAATAAGTTGGAGCAGTTGAATCTTACTCCCGCATGTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATCGAAGAGAAGATTAATAAAATAAAGTGGTGTGTGTCACCCAATGGATCTCGCTTCATCCTTTCAACAAATGAAAAGACTATTAAATTATGGAAGGTTAAGGAGCATAAGGTGAAAACTGTTAAAGAGATGAACCCCAATCGATTTGTGAGTTCAGAGAATGCACTTTTGGCGGGAATCAGTTTCACTAGTGAACAAGACAAAGTATCTCTTTCCAATGGTTGCCATTGGAATTTGTCAGAGAATATGGCAACGAACAAGGTAGCCTCTAAAGACATTCATGACATGATTGCTGATCAAGACAACACTTCTCGGAGAAGATGCCGAAAGGTGTATGCTCATGCTCACGATTATAATATTAACTCCATTTCTAACAATAGTGATGGTGAGACATTTATTTCTGCAGACGACTTGCGAATAAACTTATGGAACCTTGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACAGAGATCATAACGTCGGCTGAATTCCATCCTCTGCATTGTAATCTTCTTGCGTACAGCAGCTCAAGGGGTTTTATTCGTCTAGTGGACATGCGCCAGTCTGCATTATGTGATGATAGTGCAATTCTGTTACGAACTGAAGAACTGAATCAACCAAAATCATTTTTTGCGGAGTTAATTTCATCCATTTCGGATATAAAATTTTCAAGTGATGGACGGTTTATCATTAGCCGGGATTACATGAATTTAAAGCTTTGGGATATCCACAAGTGCTCTTCCCCGGTTGCAGTTTTCAAGATCCACGAGCACCTGCGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTCAGTGCAGACGGGCTTCACTTTGCAACTGGAACTTATAGCAACCAATTACGGATGTTCTCTTATGGCTCTGGAAGTTCAGAAGGGACCACTACAGAAGTGGGAAAGATTCCTGATAGGAAGCCACATCTCCAAACCACTCGGCGGGTGAGAAGATCGTCCTTAAGCAATTTGACACGTGATTTTTTTCGGCATGGCAATGAACATTCAAACTCGGACAATAACGAAACTTCTGTTGACCTGAACTCCAAGTTACTACATTCAGCGTGGCACCCATCCGAAAATTTAATCGCATGTGCTGCTGGAAGTGGTTTGTTCATCCATTATGCATAA 1914 42.42 MLVDPRMAFAFHQPLFFSPAPDETAPKENISAGEVELQDSLVVPGNEDRELKDRLLREYGGHISSLKQEFSKTKKKANLPREAKQILLHWWNSHSQWPYPTDTEKVELAESTGLTRKQINNWSGIDVDMTVGNDSLCAPLEWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFERRDGKDTSKNYPTRNKLEQLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIKWCVSPNGSRFILSTNEKTIKLWKVKEHKVKTVKEMNPNRFVSSENALLAGISFTSEQDKVSLSNGCHWNLSENMATNKVASKDIHDMIADQDNTSRRRCRKVYAHAHDYNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDDSAILLRTEELNQPKSFFAELISSISDIKFSSDGRFIISRDYMNLKLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGTYSNQLRMFSYGSGSSEGTTTEVGKIPDRKPHLQTTRRVRRSSLSNLTRDFFRHGNEHSNSDNNETSVDLNSKLLHSAWHPSENLIACAAGSGLFIHYA 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29621606 29631846 + CaPI482276_06g018570.1 Cam06g1857 130157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1857 637 SMART HOX_1 72 130 IPR001356 GO:0003677(InterPro)
Cam06g1857 637 SMART WD40_4 230 270 IPR001680 GO:0005515(InterPro)
Cam06g1857 637 SMART WD40_4 343 382 IPR001680 GO:0005515(InterPro)
Cam06g1857 637 SMART WD40_4 153 188 IPR001680 GO:0005515(InterPro)
Cam06g1857 637 SMART WD40_4 386 433 IPR001680 GO:0005515(InterPro)
Cam06g1857 637 SMART WD40_4 452 490 IPR001680 GO:0005515(InterPro)
Cam06g1857 637 SMART WD40_4 517 548 IPR001680 GO:0005515(InterPro)
Cam06g1857 637 SUPERFAMILY Homeodomain-like 72 122 IPR009057 -
Cam06g1857 637 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 230 244 IPR018067 -
Cam06g1857 637 ProSiteProfiles ELK domain profile. 50 70 IPR005539 GO:0003677(InterPro)
Cam06g1857 637 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 140 636 IPR000009 GO:0000159(InterPro)|GO:0000159(PANTHER)|GO:0005829(PANTHER)|GO:0019888(InterPro)|GO:0019888(PANTHER)
Cam06g1857 637 SUPERFAMILY WD40 repeat-like 161 632 IPR036322 GO:0005515(InterPro)
Cam06g1857 637 Pfam Homeobox KN domain 90 122 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam06g1857 637 Gene3D - 200 439 IPR015943 GO:0005515(InterPro)
Cam06g1857 637 Gene3D - 58 125 - -
Cam06g1857 637 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 439 466 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cam06g1857 637 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 410 438 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cam06g1857 637 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 606 635 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cam06g1857 637 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 167 187 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cam06g1857 637 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 521 547 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cam06g1857 637 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 467 494 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cam06g1857 637 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 246 274 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cam06g1857 637 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 354 381 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cam06g1857 637 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 495 520 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cam06g1857 637 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 382 409 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cam06g1857 637 Gene3D - 440 635 IPR015943 GO:0005515(InterPro)
Cam06g1857 637 ProSiteProfiles 'Homeobox' domain profile. 70 122 IPR001356 GO:0003677(InterPro)
Cam06g1857 637 Pfam ELK domain 50 71 IPR005539 GO:0003677(InterPro)
Cam06g1857 637 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 158 318 - -
Cam06g1857 637 SMART ELK_2 50 71 IPR005539 GO:0003677(InterPro)
Cam06g1857 637 Pfam WD domain, G-beta repeat 347 382 IPR001680 GO:0005515(InterPro)
Cam06g1857 637 CDD homeodomain 74 122 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1857 K04354 - - csv:101206601 928.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1857 Cam-Chr6:29621606 Cam07g1202 Cam-Chr7:26412747 4.00E-168 dispersed
Cam06g1857 Cam-Chr6:29621606 Cam08g2251 Cam-Chr8:27644182 6.40E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36