Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1859 ATGGGTGCTGAAGCCATATTTGGAGTCCAACGTTGTTTATACTCCTCTCATATTTGGAGCCCAACATTGTTTATAGTCCACTCATCTCAGATGATATCCACCGAAATTGTGGACTTGTCAAGTGATGATGAGGAAGGATCAAACTTGAAAGCCGTGAAGTTGGAGCCAGGAGTTGGTGGGTCTGTGGTTCTACCAAAAGAGCACGTAAAGAAGAATATCATCAAACTTGAAAAACCAAATACTGAATTTGTTAGTCAAGGATTTGATGAAAATAGGAGCCCGAATGTTTGGAGTGCTGGGCAGAGTAGCTCTAGTATATTGGATCAGGTGCCATCTCCAGCTGATGATTCTGGCCTTACATCCCCATCTCCCTTGTGTCCTGCACCAGTTTGTCGACAATTCTGGAAAGCTGGCAACTATAATGATGGAGTTCCTTCTAATGTCACCGTCCAAAGTTCCAAAGGCCATCTGCATGTCCACCCTATGTTCCTTCATTCAAATGCTACTTCACACAAATGGGCCTTTGGAGCTGTTGCAGAGCTGCTTGATAACGCTGTTGATGAGATCCCCAACGGAGCTACCTTTGTCAATGTGGATAAAATCTTGAATGCAAGAGATGGAAGTCCTGCTTTGTTAATTCAAGACGATGGAGGTGGAATGGATCCTGAAGCGATGAGGAGGTGTATGAGCTTTGGATTTTCAGATAAATCATCAAAATCAGCCATCGGACAATATGGAAATGGTTTCAAAACCAGCACTATGAGACTTGGTGCAGATGTTATTGTCTTCAGTCGGCATGTGAATAATAGGTCCAGGGTATCAACGCAGAGTATTGGTCTTCTATCCTATACATTTTTGACCCGTTCAGGCTACAACAGAATTGTAGTGCCTATGGTAGATTATGAATATAACACATCAAGTGGCAAAATGGAAATATTGCACGGGAGAGAACGTTGTATGTCTAACCTTTCCATACTTCTTCAGTGGTCTCCGTACTCGTCGGAGTCTGAACTTCTTAAGCAATTTGATGATATTGGATATCATGGCACAAAAGTAATCATCTTTAATTTGTGGTATAATGGAGACGGTAGAATGGAGCTTGACTTCGATATAGATCCGGAGGACATTTGCATTGACAGAGATATAAAAAAAATTGACGCTCTCCCTGCATCAAAGGCAATCAACGAGCAGCACATTGCTAATCGATTGCAATATTCTCTCCGCGAATATTTATCAATCTTGTATTTGCGGATGTCTGAAAATTTCAAAATAGTATTGCGTGGGAGGGTTGTTTTGCATCGTAATCTTGCCGATGATCTCAAGTATCTCGAATACATTTTGTATAAGCCTCAAAGTGGTGGACATGTGGAGGGTGTGGTTGTTACTACAATTGGGTTCCTGAAGGAGGCCCCGGATGTCAATATACACGGTTTTAATGTTTACCACAAAAATCGTTTGATTCTGCCATTTTGGAGGGTTGTGAGCTATTCAGACAGTAGAGGAAGAGGCGTTGTTGGCATTCTCGAAGCAAGTTTTATTGAGCCTACACATAATAAACAAGACTTTGAGAGAACTTCTCTTTTCCAGAAGCTTGAAGCTCGTTTGAAAGATATGACTTGGGAATACTGGGATTATCATTGTGGACTCGTCGGGTATCAAGTTAAGAAACAACTCCGTGTGTCAGCAGCCTATCAAACACCATCCAACATCACAGTACCTGCTGGTACGGAACATCCTCACATGTTGAAACAATGCTTTCCAGTTACGGTCACAGAGGCTAATGAAACAGCACATGGGAGACCCAAACAATTTACTCTGGAAACACGGGGGAAATCTAGAGAAGGAGTATGTCTGAAGAGAAAGGCAGATGTTTTGATAGAAGGACAGTCTGTCCGTGCTTATCAACAGAGCAATCAACAGAACAATCAACAGGCTATTGTTTTGTTGGAAGAAAATACGAAGCTTCGTGCAAAATGTTCAGAGTATGAAAAGCGGGAGGAGGAACTAAATCTCAAGGCAACACGGCTTAGGAGGGACATTCAGGAAGTTGAACACGAGATCCTGCGGTTGTTGGATGAGTTAAAATATTTAGAAGCAGTTAAGCAATTGGCTGAAGCAATGGAGCACTTGGTGGGATCGAAGCAGGTGGACTGTATTTTCACCATGAAAAATCTTTGA 2178 42.1 MGAEAIFGVQRCLYSSHIWSPTLFIVHSSQMISTEIVDLSSDDEEGSNLKAVKLEPGVGGSVVLPKEHVKKNIIKLEKPNTEFVSQGFDENRSPNVWSAGQSSSSILDQVPSPADDSGLTSPSPLCPAPVCRQFWKAGNYNDGVPSNVTVQSSKGHLHVHPMFLHSNATSHKWAFGAVAELLDNAVDEIPNGATFVNVDKILNARDGSPALLIQDDGGGMDPEAMRRCMSFGFSDKSSKSAIGQYGNGFKTSTMRLGADVIVFSRHVNNRSRVSTQSIGLLSYTFLTRSGYNRIVVPMVDYEYNTSSGKMEILHGRERCMSNLSILLQWSPYSSESELLKQFDDIGYHGTKVIIFNLWYNGDGRMELDFDIDPEDICIDRDIKKIDALPASKAINEQHIANRLQYSLREYLSILYLRMSENFKIVLRGRVVLHRNLADDLKYLEYILYKPQSGGHVEGVVVTTIGFLKEAPDVNIHGFNVYHKNRLILPFWRVVSYSDSRGRGVVGILEASFIEPTHNKQDFERTSLFQKLEARLKDMTWEYWDYHCGLVGYQVKKQLRVSAAYQTPSNITVPAGTEHPHMLKQCFPVTVTEANETAHGRPKQFTLETRGKSREGVCLKRKADVLIEGQSVRAYQQSNQQNNQQAIVLLEENTKLRAKCSEYEKREEELNLKATRLRRDIQEVEHEILRLLDELKYLEAVKQLAEAMEHLVGSKQVDCIFTMKNL 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29640159 29660282 + CaPI482276_06g018590.1 Cam06g1859 130159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1859 725 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 114 701 IPR045261 GO:0005634(PANTHER)|GO:0016887(InterPro)
Cam06g1859 725 Pfam Morc6 ribosomal protein S5 domain 2-like 405 543 IPR041006 -
Cam06g1859 725 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 174 375 IPR036890 -
Cam06g1859 725 Coils Coil 652 700 - -
Cam06g1859 725 FunFam MORC family CW-type zinc finger protein 4 160 363 - -
Cam06g1859 725 MobiDBLite consensus disorder prediction 94 121 - -
Cam06g1859 725 MobiDBLite consensus disorder prediction 94 119 - -
Cam06g1859 725 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 175 273 - -
Cam06g1859 725 Gene3D - 162 313 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1859 K24135 - - csv:101206362 1145.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1859 Cam-Chr6:29640159 Cam07g0907 Cam-Chr7:22235807 2.40E-132 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g776 . . . . . . . . . . Cma10g00121 . Car10g00108 . . . . Bhi02g00461 Tan09g2260 . . Hepe09g0210 . . Cla06g01670 Cam06g1859 Cec06g1908 Cco06g1913 Clacu06g1815 Cmu06g1756 Cre06g2573 . Cone16ag0091 . . . . . . . . . . . . . Bma08g00093 . Cmo10g00125 . . . . . . Cpe18g00848 . . . . . . . . . . . . . . Lsi06g01563 Csa01g00140 . Cme02g01985
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003763 0 11 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 6 2 2 46