Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g1875 | ATGGTGGGTTCGGTAGGTTTGTGTCAGCCTAGCCTAGTTGCAATGTACAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCTGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCGGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTCGACGCTGCGAATGCTGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA | 723 | 45.09 | MVGSVGLCQPSLVAMYRVLLHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29809294 | 29812271 | - | CaPI482276_06g018750.1 | Cam06g1875 | 130175 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g1875 | 240 | Pfam | Lateral organ boundaries (LOB) domain | 66 | 163 | IPR004883 | - | |
Cam06g1875 | 240 | Coils | Coil | 145 | 172 | - | - | |
Cam06g1875 | 240 | ProSiteProfiles | LOB domain profile. | 65 | 166 | IPR004883 | - | |
Cam06g1875 | 240 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 64 | 184 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam06g1875 | Cam-Chr6:29809294 | Cam11g1136 | Cam-Chr11:22193914 | 8.60E-47 | dispersed | |
Cam09g0063 | Cam-Chr9:1521117 | Cam06g1875 | Cam-Chr6:29809294 | 1.10E-22 | transposed | |
Cam01g1406 | Cam-Chr1:27604745 | Cam06g1875 | Cam-Chr6:29809294 | 6.10E-52 | wgd | |
Cam10g1288 | Cam-Chr10:26329080 | Cam06g1875 | Cam-Chr6:29809294 | 3.60E-56 | wgd | |
Cam06g1875 | Cam-Chr6:29809294 | Cam09g1974 | Cam-Chr9:34402756 | 8.00E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52205 | PF03195 | LOB | 5.30E-42 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g1875 | - | - | - | 0.0 |