Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1875 ATGGTGGGTTCGGTAGGTTTGTGTCAGCCTAGCCTAGTTGCAATGTACAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCTGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCGGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTCGACGCTGCGAATGCTGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA 723 45.09 MVGSVGLCQPSLVAMYRVLLHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29809294 29812271 - CaPI482276_06g018750.1 Cam06g1875 130175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1875 240 Pfam Lateral organ boundaries (LOB) domain 66 163 IPR004883 -
Cam06g1875 240 Coils Coil 145 172 - -
Cam06g1875 240 ProSiteProfiles LOB domain profile. 65 166 IPR004883 -
Cam06g1875 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 64 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1875 Cam-Chr6:29809294 Cam11g1136 Cam-Chr11:22193914 8.60E-47 dispersed
Cam09g0063 Cam-Chr9:1521117 Cam06g1875 Cam-Chr6:29809294 1.10E-22 transposed
Cam01g1406 Cam-Chr1:27604745 Cam06g1875 Cam-Chr6:29809294 6.10E-52 wgd
Cam10g1288 Cam-Chr10:26329080 Cam06g1875 Cam-Chr6:29809294 3.60E-56 wgd
Cam06g1875 Cam-Chr6:29809294 Cam09g1974 Cam-Chr9:34402756 8.00E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52205 PF03195 LOB 5.30E-42 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1875 - - - 0.0