Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1883 ATGGAACCACGACGGCGGCGGCGACCTCTGTTCCTTCTACTTCAGCTCTTTATCTTCTACCTCTTCTTCTTTCCCTCTTATTCAGTTGATTTTCTCTTCAATTCATTCTCAAACCAATCGAATGGCACTGACATCATTCTCATTAGCGACGCGAGATTCGATTCCCCTGTAATTCGCCTCAACAACGACTCAAACCCAAATTCAATCGGGCGAGCTTTCTATCACACGAAGCTGATTATGAAACCCACTTCGAATTCCACTACGATTTCTTCTTTTTCAACTTCTTTTGTGTTCTCAATCTTGTTGGAAGTCGCTACAAGTCCAGGCTTCGGTATGGCCTTCGTTCTTTCCAATTCCACTTCCCTTCCCGGCGTTATAGCCGGCCAATACTTCGGTCTCTTCACAAATTCCACAACCCATGTCGTTGCTCCACTTCTCGCCGTCGAATTCGACACCGGCCGAAACACAGAGTTCAACGACCCAGATGATAGCCACATCGGAATCGATTTGAACAGTATGTTGTCGAGTAAAACACACGGCGCTGGGTATTTTGACTCTAATGGGCAATTTATTCCAATTCAGATGAGAAATGGGCAAAACCTTCGCGCTTGGATCGAATTCGATGGGTCAAATTTCGAAATCAACGTCACAATCGCCCCAATTGGAATTCCTCGTCCTTCAATACCCACTTTGAGTTTTAGGGATCCTGTGATTGCGAATTATGTATCGACTGAAATGTTTGTGGGATTTTCAGCATCGAAGACAAAATGGGTTGAGGCGCAGAGGATTTTGGCGTGGAGCTTTAGTGACACTGGGGTTGCTAGAGAGATTAACACCACAAATTTCCCTGTGTTTATGAGAGCATCATCACCGTCTTCCTTGTCGCCGGGGTCTGTTGCCGGAATTGTAATTGGCTGTGTTGTGTTTGTGATCATAATTTCTGGATTTGGGGTTTTTTGGTATTGGCGAAAGAACAGAGCAAAAGACGAAGATGATGAAATTGAGGATTGGGAGCTCGAATACTGGCCTCACAGATTCTCCAACGAGGAGCTTTCAAAGGCTACTGATGGATTTTCCGATGAAAATCTGTTGGGTTCCGGCGGATTTGGAAAGGTATTCAAAGGAACTTTACCAAACAACACGGAAATCGCCGTTAAGTGTGTAAACCACGATTCAAAACAGGGGTTAAAGGAATTCATGGCTGAAATCTCGAGTATGGGTAGGCTTCAACATAAAAATCTAGTTCAAATGCGAGGATGGTGTCGAAAAGGCAATGAATTAATGTTGGTTTATGATTACATGCCGAATGGAAGCCTTAATCGGTGGATTTTTGACAAACCCACAACGCTACTCAGCTGGAAACAGCGCCGCCGTGTGCTCGCCGACGTTGCAGAGGGTTTGAACTATCTCCACCATGGTTGGGATCAGGTGGTAATTCACAGAGACATAAAATCGAGCAATGTATTGTTGGATTCGGAAATGAGAGGCAGAGTCGGCGATTTTGGGCTGGCGAAATTGTACCAACACGGCGAAACTCCGAACACCACTCGAGTCGTTGGGACTTTGGGGTATTTAGCGCCGGAGATTGCGACAGTGGCTACTCCGACGGCGGCTAGCGATGTGTATAGTTTTGGGGTTGTGGTTCTTGAAGTGGTGTGTGGACGGCGGCCGATTGAGTTGGCCGCGGAGGAAGAAGAAATGGTACTTATTGATTGGGTGAGGGATCTTTACTCTGCCGGCCGGTTGGTTGCGGCGGCAGACTCGAGAATCAGAGATGAGTATGAAATTGAAGAGATTGAGCTGATGTTGAAGCTTGGTTTAGCTTGTTGTCATCCGGACCCGGAACGCCGGCCGACAATGAGAGAGGTGGTGGCAGTTTTGATAGGAGAACAACCGGCAGCCGAGTCGGTAGAGCTTTTATCGGGATTGGCCAGTGGCATGGTTGATGGCATCTCAGACGAGGATGTGTGA 1971 46.93 MEPRRRRRPLFLLLQLFIFYLFFFPSYSVDFLFNSFSNQSNGTDIILISDARFDSPVIRLNNDSNPNSIGRAFYHTKLIMKPTSNSTTISSFSTSFVFSILLEVATSPGFGMAFVLSNSTSLPGVIAGQYFGLFTNSTTHVVAPLLAVEFDTGRNTEFNDPDDSHIGIDLNSMLSSKTHGAGYFDSNGQFIPIQMRNGQNLRAWIEFDGSNFEINVTIAPIGIPRPSIPTLSFRDPVIANYVSTEMFVGFSASKTKWVEAQRILAWSFSDTGVAREINTTNFPVFMRASSPSSLSPGSVAGIVIGCVVFVIIISGFGVFWYWRKNRAKDEDDEIEDWELEYWPHRFSNEELSKATDGFSDENLLGSGGFGKVFKGTLPNNTEIAVKCVNHDSKQGLKEFMAEISSMGRLQHKNLVQMRGWCRKGNELMLVYDYMPNGSLNRWIFDKPTTLLSWKQRRRVLADVAEGLNYLHHGWDQVVIHRDIKSSNVLLDSEMRGRVGDFGLAKLYQHGETPNTTRVVGTLGYLAPEIATVATPTAASDVYSFGVVVLEVVCGRRPIELAAEEEEMVLIDWVRDLYSAGRLVAAADSRIRDEYEIEEIELMLKLGLACCHPDPERRPTMREVVAVLIGEQPAAESVELLSGLASGMVDGISDEDV 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29875648 29877618 - CaPI482276_06g018830.1 Cam06g1883 130183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1883 656 PANTHER - 57 631 IPR050528 GO:0005886(PANTHER)
Cam06g1883 656 ProSiteProfiles Protein kinase domain profile. 358 634 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1883 656 Gene3D Transferase(Phosphotransferase) domain 1 434 639 - -
Cam06g1883 656 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 286 IPR013320 -
Cam06g1883 656 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524(InterPro)
Cam06g1883 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1883 656 FunFam L-type lectin-domain containing receptor kinase S.1 343 433 - -
Cam06g1883 656 SUPERFAMILY Protein kinase-like (PK-like) 334 627 IPR011009 -
Cam06g1883 656 SMART serkin_6 358 634 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1883 656 FunFam L-type lectin-domain containing receptor kinase S.4 434 639 - -
Cam06g1883 656 Pfam Protein kinase domain 359 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1883 656 Gene3D Phosphorylase Kinase; domain 1 321 433 - -
Cam06g1883 656 ProSitePatterns Legume lectins beta-chain signature. 146 152 IPR019825 -
Cam06g1883 656 Gene3D - 27 286 - -
Cam06g1883 656 CDD STKc_IRAK 364 627 - -
Cam06g1883 656 CDD lectin_legume_LecRK_Arcelin_ConA 29 272 IPR001220 GO:0030246(InterPro)
Cam06g1883 656 FunFam L-type lectin-domain containing receptor kinase S.4 27 276 - -
Cam06g1883 656 Pfam Legume lectin domain 29 281 IPR001220 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0613 Cam-Chr3:6955323 Cam06g1883 Cam-Chr6:29875648 1.70E-140 dispersed
Cam06g0804 Cam-Chr6:11070220 Cam06g1883 Cam-Chr6:29875648 2.40E-67 dispersed
Cam06g1883 Cam-Chr6:29875648 Cam07g0282 Cam-Chr7:3905758 3.40E-130 dispersed
Cam06g1883 Cam-Chr6:29875648 Cam10g2096 Cam-Chr10:34632247 4.00E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85288 PF00069 Pkinase 9.90E-53 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1883 - - - 0.0