Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1886 ATGGCCATGGATCCCAACCCCAAAAGTTTCCCGATCCTTTCTTACGTCATGGCCAGAATCCCCTCTCTCAGCCCTCGAACGCCGGCCACTGAATTCGACATCGAACAACCTGCATCTCCGGCCTCCCGCCGCGCTCCTTCCGATCCTTCCTCATCCTCCTCCCGAATCGTCCATGATATGCCTCATCTCTCCGACCCCAAGGTTTTGGCTTCTATGACTACCGCTATATCTGATGTTGCTCAGACCCGATCCGTCCTCAAAACCCTTGGGGAGAGACCAGACCATGAGGCTGTTGATACTGCCAAGGCTAAGCTCGCTGAGGTAGAAGTTAATTTGTCTGCCAAGCTTCAGGAAATCGTGCTTTCGTCTAGGCCGGCGGATGTCGAGTTGCTTGAGTGGAGGGCGCATCTTGCTGAGAAAGAGAACGAGTGCCGCCAGGCGGCGGATAAAGAGAAGCAGGGGTATAAGGCAATTGTGCAACTGGATGAGATGCACGAGGCGTATGAGAAGATGTTGAAGGAAGCAGAGGAGAGGTTGGTGAAGATTTACGAGTCGGCTGAGAGAGGGCTGCAGGAGGAAGAACACTTGGATCCAGTTAGCGAGGAGGTCAATGAGGAGGTTGCGAGGATTCTTCAGGACGCGAATGAGAAGGAAATGGATCGAATTAGTCTCTCCGGCCGACGCTTGCGGTTCTTGCCTGAAGGATTTGGACGCATTCGGGGATTGGTTGTGCTTGATATCTCCAGCAATCAACTACAGATTATCCCCGATTCAATATCTGGCTTAGAAAATCTTGAGGAGCTGAATGCCTCATCCAATCTCCTGGAGTCACTGCCCGACTCAATTGGGTTATTACAAAAGCTGAAACTCCTGAATGTCTCTGGGAACAAGTTGCATGCCCTTCCTGACACAATATGCCATTGCAGGTCTTTGGTGGAGTTGGATGTGAGCTTCAACAGTCTAACGTACTTGCCAACAAATATTGGCCATGAACTGGTGAATTTGGAGAAGCTTGCTATCCAGTTAAACAAGATACGCTCACTTCCCTCTTCTCTTTGTGGTATGAGCTCTTTGCGTTATCTGGATGCGCATTTCAACGAGCTTCATGGCCTTCCTCAGGCAATTGGGAAACTGACACAACTTGAGTATCTCAACCTAGGCAGTAATTTTACTGACCTTACTGAACTTCCACATACTTTTGGTGATTTATCCAGCCTTAAGGAACTTGATCTCAGCAATAACCAGATTCACGCTCTACCCGATACATTTGGCCATCTTGAGAATTTAAAGAAACTAAACTTGGAGCAAAATCCTCTTACAATTCCACCAATGGAAGTGGTTAACAAAGGACCGGATGCTGTGAGGACATTCATGTCCAAAAGATGGCTTGAAATTCTGGAAGAGGAAGATAGAAAAAGAACTCTTGAAATGGATGAACAGACGCAGACTGGATGGCTGACACGAAGCACCTCTTGGTTGAAGACTTACGTTTCTGGCGTTTCAGAGACGGTGTCTGGTATCGTTGGATCTCCCAAATCTCCAAGAGACCCGTATCTTGATCAACAGCTATAA 1572 48.16 MAMDPNPKSFPILSYVMARIPSLSPRTPATEFDIEQPASPASRRAPSDPSSSSSRIVHDMPHLSDPKVLASMTTAISDVAQTRSVLKTLGERPDHEAVDTAKAKLAEVEVNLSAKLQEIVLSSRPADVELLEWRAHLAEKENECRQAADKEKQGYKAIVQLDEMHEAYEKMLKEAEERLVKIYESAERGLQEEEHLDPVSEEVNEEVARILQDANEKEMDRISLSGRRLRFLPEGFGRIRGLVVLDISSNQLQIIPDSISGLENLEELNASSNLLESLPDSIGLLQKLKLLNVSGNKLHALPDTICHCRSLVELDVSFNSLTYLPTNIGHELVNLEKLAIQLNKIRSLPSSLCGMSSLRYLDAHFNELHGLPQAIGKLTQLEYLNLGSNFTDLTELPHTFGDLSSLKELDLSNNQIHALPDTFGHLENLKKLNLEQNPLTIPPMEVVNKGPDAVRTFMSKRWLEILEEEDRKRTLEMDEQTQTGWLTRSTSWLKTYVSGVSETVSGIVGSPKSPRDPYLDQQL 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29905239 29908253 + CaPI482276_06g018860.1 Cam06g1886 130186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1886 523 Pfam Leucine rich repeat 221 275 IPR001611 GO:0005515(InterPro)
Cam06g1886 523 Pfam Leucine rich repeat 397 439 IPR001611 GO:0005515(InterPro)
Cam06g1886 523 Pfam Leucine rich repeat 309 368 IPR001611 GO:0005515(InterPro)
Cam06g1886 523 Coils Coil 98 118 - -
Cam06g1886 523 Coils Coil 158 185 - -
Cam06g1886 523 SMART LRR_bac_2 308 327 - -
Cam06g1886 523 SMART LRR_bac_2 332 351 - -
Cam06g1886 523 SMART LRR_bac_2 241 258 - -
Cam06g1886 523 SMART LRR_bac_2 403 422 - -
Cam06g1886 523 SMART LRR_bac_2 355 374 - -
Cam06g1886 523 SMART LRR_bac_2 378 399 - -
Cam06g1886 523 SMART LRR_bac_2 285 304 - -
Cam06g1886 523 SMART LRR_bac_2 262 281 - -
Cam06g1886 523 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515(InterPro)
Cam06g1886 523 Pfam Leucine Rich Repeat 287 308 IPR001611 GO:0005515(InterPro)
Cam06g1886 523 Gene3D Ribonuclease Inhibitor 323 390 IPR032675 -
Cam06g1886 523 Gene3D Ribonuclease Inhibitor 136 322 IPR032675 -
Cam06g1886 523 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515(InterPro)
Cam06g1886 523 SUPERFAMILY L domain-like 219 440 - -
Cam06g1886 523 Coils Coil 130 150 - -
Cam06g1886 523 MobiDBLite consensus disorder prediction 26 62 - -
Cam06g1886 523 MobiDBLite consensus disorder prediction 43 58 - -
Cam06g1886 523 FunFam Plant intracellular Ras-group-related LRR protein 2 327 500 - -
Cam06g1886 523 SMART LRR_typ_2 403 425 IPR003591 -
Cam06g1886 523 SMART LRR_typ_2 309 331 IPR003591 -
Cam06g1886 523 SMART LRR_typ_2 285 308 IPR003591 -
Cam06g1886 523 SMART LRR_typ_2 378 402 IPR003591 -
Cam06g1886 523 SMART LRR_typ_2 239 261 IPR003591 -
Cam06g1886 523 SMART LRR_typ_2 426 449 IPR003591 -
Cam06g1886 523 SMART LRR_typ_2 355 377 IPR003591 -
Cam06g1886 523 SMART LRR_typ_2 332 354 IPR003591 -
Cam06g1886 523 SMART LRR_typ_2 262 284 IPR003591 -
Cam06g1886 523 PRINTS Leucine-rich repeat signature 403 416 - -
Cam06g1886 523 PRINTS Leucine-rich repeat signature 242 255 - -
Cam06g1886 523 FunFam Plant intracellular Ras-group-related LRR protein 9 140 323 - -
Cam06g1886 523 PANTHER - 220 338 IPR050216 -
Cam06g1886 523 Coils Coil 200 220 - -
Cam06g1886 523 Gene3D Ribonuclease Inhibitor 391 450 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1886 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2775 Cam-Chr5:34949641 Cam06g1886 Cam-Chr6:29905239 5.70E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37