Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1889 ATGGAAGCTGGGAGTAGATTCTACTCTGCTACGGATGAGTTCAGATTGGAAGGCAAATGGTTGGTTGACCCCAGGCATCTCTTCGTTGGACCTAGAATTGGAGAGGGAGCTCATGCCAAAGTTTACGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACAGCTGATGAGGTTGCAAAGAAAGAGGCTCGGTTTGCTCGAGAAGTTGCAATGCTGTCTAAAGTGCAACATAAGAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACCGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAACATGCGCCCACGGTGCTTGGACACACGCGTAGCAGTTGGTTTTGCGCTTGATATTGCTCGTGCTATGGAATGTCTTCACTCACATGGCATCATACACCGTGATCTGAAACCTGAGAACCTTCTGTTGACTGCAGATCACAAAACGGTTAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCGTTGACGGAGATGATGACTGCAGAGACGGGGACATACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTGACACTAAGGCAAGGGGAGAAGAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCTATTGTGTTATGGGAACTGCTACACAACAAGTTGCCATTTGAAGGCATGTCAAATCTTCAAGCAGCATATGCAGCTGCTTTTAAGAATGTTAGGCCTAGCGCAGAGAATATTCCAGAGGAACTGGCTATCATTCTAACATCATGCTGGCAGGAGGATGCAAATGCTCGTCCAAATTTCACCCAAATAATCCAAATGTTACTTAATTACCTTTATACCATTTCACCCCCCGAGCCGATGATACCTTCCCGAATTTTCTCTTCTGAGAACACTGTTTTTCCTCCTGAGTCTCCCGGAACAAGCTCACTGATGGCAGTCCGTGACGATTCAGGGGACACTCCAAAAGCTAAAATGGAAAATAATCCCAGAGGTGGTTTTAGTTATGTAGTATCACAGCCTAAGCCTTACATCATCATGGTAGAATGGAAGATCATCCTGATGCTTGGTTTATCTACTTATATTTATCTGTGCATTTCACTTTCTTCTTCAACTTGGTGCTTTGTGCCTTCAATCTACAAGATTATGTACAGAGCTGTAACTGAATTAGCTGCCTTTATTTAA 1221 43.65 MEAGSRFYSATDEFRLEGKWLVDPRHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETADEVAKKEARFAREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENIPEELAIILTSCWQEDANARPNFTQIIQMLLNYLYTISPPEPMIPSRIFSSENTVFPPESPGTSSLMAVRDDSGDTPKAKMENNPRGGFSYVVSQPKPYIIMVEWKIILMLGLSTYIYLCISLSSSTWCFVPSIYKIMYRAVTELAAFI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29923654 29926491 + CaPI482276_06g018890.1 Cam06g1889 130189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1889 406 Pfam Protein tyrosine and serine/threonine kinase 32 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1889 406 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524(InterPro)
Cam06g1889 406 SMART serkin_6 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1889 406 SUPERFAMILY Protein kinase-like (PK-like) 19 316 IPR011009 -
Cam06g1889 406 FunFam serine/threonine-protein kinase HT1 108 307 - -
Cam06g1889 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1889 406 CDD STKc_MAP3K-like 33 287 - -
Cam06g1889 406 PANTHER SERINE-THREONINE PROTEIN KINASE 25 288 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cam06g1889 406 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam06g1889 406 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1889 406 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1889 406 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1889 406 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam06g1889 406 MobiDBLite consensus disorder prediction 316 338 - -
Cam06g1889 406 Gene3D Transferase(Phosphotransferase) domain 1 108 296 - -
Cam06g1889 406 FunFam Kinase suppressor of Ras 1 16 106 - -
Cam06g1889 406 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1889 Cam-Chr6:29923654 Cam11g1142 Cam-Chr11:22404977 1.20E-61 dispersed
Cam01g1979 Cam-Chr1:33079108 Cam06g1889 Cam-Chr6:29923654 4.10E-84 transposed
Cam10g2233 Cam-Chr10:35605944 Cam06g1889 Cam-Chr6:29923654 6.00E-115 transposed
Cam10g1299 Cam-Chr10:26466765 Cam06g1889 Cam-Chr6:29923654 1.30E-157 wgd
Cam06g1889 Cam-Chr6:29923654 Cam09g1981 Cam-Chr9:34470023 4.70E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85289 PF07714 PK_Tyr_Ser-Thr 4.90E-58 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1889 - - - 0.0