Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1894 ATGGAAGCTCTGGCGCTTCCTTCCCTGAATTCACTCCCCATTTCTTGTTCTAATTTGAAGAAACGAGGTTTTGCCAACTACCCCAGAAGATTGCATCACTGTAAATTTTACCATCAATCCACCTTCAAGTTCAATGGTACCAACCGCTCTCATTTCAATGTTATCAAAATGCAAAGTGATAGTGATGACTATGAGCTGAAGCAAATGAGGGACATGGCTGCAGCTAAAAAGAGATGGGACTCTCTGATCCGAGAAGGCAAAGTGAAAGTTCTGATGCCAAGGGAAGCTGGTTATGCCATTCAGCTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTACAGAACACAAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCTATCTTTGATGTTGATGACAAACTTGATCCTGGAACTCTTTCTCGAAAAGTCACAAGCTTCATGATGGGGGGTTGGTGGAGTGGGGTGCCTACAGTATCCTACAACAGCCGATTCTTGACAGAAGTTCAAGAGAAGTTTCCAAAAGATGCTGACCTTATTCTTGCATGCCAAAAGGGATTGAGGTCCCTAGCTGCATGCGAACTCCTCTACAATGCTGGTTATAGAAACCTTTTCTGGATTCAAGGCGGTCTAGATGCTGCTGAAGAAGAGGATCTTGTCAGAGAAGGTCCTCAGCCCTTAAAATTCGCTGGGATTGGTGGGCTTTCAGAATTCCTTGGTTGGACAGATCAACAAAGGGTGGCTGGTGCAAAAGAAGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTCTGGTTGCAGTCTTTCTTGCTGCTGATGTCCTGTTTATCGGCGCTCAGCAATTGGGTCATTATATTCAGGAATTACGGTCTCACTAA 879 44.94 MEALALPSLNSLPISCSNLKKRGFANYPRRLHHCKFYHQSTFKFNGTNRSHFNVIKMQSDSDDYELKQMRDMAAAKKRWDSLIREGKVKVLMPREAGYAIQLSDKTLLDVRPSTEHKKAWVKGSTWIPIFDVDDKLDPGTLSRKVTSFMMGGWWSGVPTVSYNSRFLTEVQEKFPKDADLILACQKGLRSLAACELLYNAGYRNLFWIQGGLDAAEEEDLVREGPQPLKFAGIGGLSEFLGWTDQQRVAGAKEGWGYRLVYSARLVAVFLAADVLFIGAQQLGHYIQELRSH 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29956444 29959752 - CaPI482276_06g018940.1 Cam06g1894 130194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1894 292 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 87 215 IPR036873 -
Cam06g1894 292 ProSiteProfiles Rhodanese domain profile. 101 224 IPR001763 -
Cam06g1894 292 SMART rhod_4 91 221 IPR001763 -
Cam06g1894 292 Pfam Rhodanese-like domain 104 214 IPR001763 -
Cam06g1894 292 CDD RHOD 106 214 - -
Cam06g1894 292 Gene3D - 88 256 IPR036873 -
Cam06g1894 292 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 292 IPR044664 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1894 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g1149 . 1185 1500 Sulfurtransferasese/Rhodanese AT1G79230 75.6 1.1e-145 513.1
Cam05g1149 . 1185 1449 Sulfurtransferasese/Rhodanese AT1G16460 73.2 5.9e-113 404.1
Cam04g1175 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 60.1 1.1e-81 300.4
Cam05g0114 . 480 940 Sulfurtransferasese/Rhodanese AT4G01050 52.7 2.9e-121 432.6
Cam01g1142 . 6 609 Sulfurtransferasese/Rhodanese AT1G09280 63.7 2.1e-224 775.4
Cam07g0536 . 84 436 Sulfurtransferasese/Rhodanese AT2G40760 75.6 1.5e-156 549.7
Cam10g1159 . 553 881 Sulfurtransferasese/Rhodanese AT1G17850 68.3 1.8e-138 489.6
Cam04g0102 . 30 235 Sulfurtransferasese/Rhodanese AT2G42220 73.8 9.2e-86 313.5
Cam10g2170 . 376 556 Sulfurtransferasese/Rhodanese AT3G08920 63.0 1.8e-64 242.7
Cam06g1894 . 1 292 Sulfurtransferasese/Rhodanese AT4G24750 66.8 3.5e-111 398.3
Cam02g2357 . 67 292 Sulfurtransferasese/Rhodanese AT5G19370 66.1 2.6e-85 312.4
Cam10g0476 . 113 464 Sulfurtransferasese/Rhodanese AT5G55130 73.0 3.6e-150 528.1
Cam05g1078 . 234 414 Sulfurtransferasese/Rhodanese AT4G27700 78.5 3.3e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31