Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1909 ATGGCGTCCACTACACTCTCCGTCTCCTCGCCTTCGATTTCTGGTTCAACAACGCCTTGTCTACCTAATAATACCGCCGCCACCGTTGCTCATTTCAAACCTCGTACCAGAACTTTCTCTACTTTTCTTTTGGGTCAAAGCCTAAGTTTGTATCGAACATCGAGAATCCGGCCAATAGGCTCTAAGAATGCTTCTAATGGGATCACTTGTCAGGCTTCTTCTTCTGTTCTTCCGTCTGCTCTTCTTTTCGATTGCGATGGGGTTCTCGTCGATACTGAAAAGGATGGCCATCGGATTTCCTTCAATGAGACCTTTGATGAGAAAGAATTGGGCGTTACTTGGGATGTAGATTTGTATGGTGAGTTACTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCGTATTTCAATAAAGTTGGATGGCCAGAAAAGGCTCCAAAGAATGAAGATGAAAGAAAGGCATTCATTGCTGGACTTCACAAGCGAAAGACAGATTTGTTCATGGCCCTTATTGAGAAGCAATTACTACCCCTTCGACCTGGTGTTGCAAAGCTGATTGATCAGGCATTAGCAAAAGGAGTGAAAGTTGCTGTTTGTAGCACTTCCAATGAGAAGGCGGTCTCTGCGATAGTATCATTTTTACTGGGACCTCAACGAGCTGAGCAGATCAAGATATTTGCAGGAGATGTAGTGCCTCGAAAGAAGCCTGACCCTGCTATCTATATCTTAGCAGCCAACACCCTGGGTGTTGATCCTTCAAGTTGTGTTGTGGTGGAGGATAGTGCCATTGGCCTTGCAGCTGCCAAATCGGCTGGAATGAAGTGCATAGTAACAAAGAGTGGGTACACGGCTGAGGAAGATTTTCTAAATGCAGATGCAGTCTTCGATTGCATTGGAGATCCTCCAGAAGAGCGTTTTGACTTGGCATTCTGTGGAAGCCTTCTTGAGAAGCAATATGTCAGCTAG 966 45.13 MASTTLSVSSPSISGSTTPCLPNNTAATVAHFKPRTRTFSTFLLGQSLSLYRTSRIRPIGSKNASNGITCQASSSVLPSALLFDCDGVLVDTEKDGHRISFNETFDEKELGVTWDVDLYGELLKIGGGKERMTAYFNKVGWPEKAPKNEDERKAFIAGLHKRKTDLFMALIEKQLLPLRPGVAKLIDQALAKGVKVAVCSTSNEKAVSAIVSFLLGPQRAEQIKIFAGDVVPRKKPDPAIYILAANTLGVDPSSCVVVEDSAIGLAAAKSAGMKCIVTKSGYTAEEDFLNADAVFDCIGDPPEERFDLAFCGSLLEKQYVS 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30039973 30043376 - CaPI482276_06g019090.1 Cam06g1909 130209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1909 321 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 77 304 - -
Cam06g1909 321 Pfam haloacid dehalogenase-like hydrolase 80 272 - -
Cam06g1909 321 Gene3D - 80 297 IPR023214 -
Cam06g1909 321 NCBIfam HAD-IA family hydrolase 164 277 IPR006439 -
Cam06g1909 321 Gene3D Putative phosphatase; domain 2 92 176 IPR023198 -
Cam06g1909 321 FunFam HAD family hydrolase 171 294 - -
Cam06g1909 321 SUPERFAMILY HAD-like 79 300 IPR036412 -
Cam06g1909 321 PANTHER XYLULOSE-1,5-BISPHOSPHATE (XUBP) PHOSPHATASE 33 308 IPR044999 GO:0016787(InterPro)
Cam06g1909 321 SFLD phosphoglycolate phosphatase 77 304 - -
Cam06g1909 321 CDD HAD_CbbY-like 80 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1909 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1913 Cam-Chr1:32599711 Cam06g1909 Cam-Chr6:30039973 2.20E-42 dispersed
Cam06g1909 Cam-Chr6:30039973 Cam07g0279 Cam-Chr7:3873526 3.00E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g885 . . Bda06g00630 . . . . Bma12g01067 . . . Cma11g00055 . Car11g00049 Sed08g0057 . Cpe04g01597 Bhi02g00571 Tan09g2336 Cmetu02g1589 . Hepe09g0075 . . Cla06g01719 Cam06g1909 Cec06g1959 Cco06g1963 Clacu06g1865 Cmu06g1807 Cre06g2622 . . Cone13ag0201 Cone19ag0189 . . . . . Blo15g00238 . . Bpe07g00870 . . . . . Cmo11g00057 . . . . . . . . . . . . . . . . . . . . Lsi06g01613 Csa01g00083 Chy02g02637 Cme02g02036
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009837 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33