Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1918 ATGCCAAGTTCTGTTCAGCACATAACTTTTTGCTGCCGTAAGAAGTCAAATAGACACGTGGTCGACGTCCCCATCAAACTTTCCTCACTCGCGGGGTTTTCGTCTTTACGGGGGTTGGTTCGCATTGCGAGCGACGGGCTCTGCTCGAGATCCAGGGTTTCGTTTCGAGGGGTTTATCTTGTTCTTGGATTAGATTCTGCCTTTGCTGTATTTCGATTTTTCTCTCCTTCTCGTGTTTTTCTTTCGTTTTCTTTTTGCTTCTCCCAAAGGCGGGAGCGGAAGGATGAAATAGTGAATTTGTTCCACGAGCTTGAGATTCCCACAAATGGCAACCCTTGCGTTCACTGGTCGACGACAGAAGGACTCCGTTGTCCGGATAAATTGCTGGGAATTAATCCTATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGAAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCGGATTACCGACATGCCGTGGAAACAGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGAATGGATACTGGAATCTCTACTCTTGATGATTCACGGGCCATTAAGAGGAAACGTATTAGTATGAATGCAGATGGTTTCGATTGTTTTGGTGCTCCTCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATAAGGTTAAAGTTAGAACTTGAACAGGTCCGACTGCTGCAAAAAAAAGCTTCTAATGTTAGCTCAATTTTTGCCGTCTCTTCATCTAGTAATATCCAGAGTTCTAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTTTAATAGGTTGTCTGAGGTATCAGTTCCTCCTGCTAAAAAGCCACTGCCCTCTGGGCGCAATGGGCCTTCTGCTAAAAGAAGCTCATCTGGGCGGTTTGAGTCTGCTAAACCAGCTGCTGTATCTGCTTCCTCGACAGCGTCATTGAAACAATGTGAACAGCTGCTGCAACGCTTGATGTCACATACGTTTGGTTGGGTTTTTAACACTCCAGTGGATGTGGTCAAGTTGAATATTCCAGATTATTTTACTGTCATAAAGCATCCTATGGATCTGGGCACTGTAAAGTCTAAGATAACTGCAGGAGAATATACACATCCGTTGGATTTTGCTGCTGATGTTCGACTTACTTTTTCAAACGCGATGACTTACAACCCTCCCGGGAATGACGTCCATACCATGGCTAAGACACTAAGTAAATTTTTTGAAGTTAGATGGAAAACTATAGAGAAGAAGCTCCCTGTGACAAGTGAAGAACAACGCCAAGTACCTTCAGCCACATTTGTTCCTAAGGAAACTGAAAGTACTCTGCCAGTGCCACCTTCAAAAAAGACAAAAATCCCTACAAATGACCCTGATGTTCAGCCAACTAGTGTGGTAAGAATCATGACCGAGCAGGAGAAGCATAAACTAAGTGTAGAGTTGGAGGCTTTGCTGGGAGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGCGAGGATGAGATTGAAATTGACATTGATGCTCTTAGTGATGATACCTTGTTTGCATTGAGGAAGCTATTAGACGATTATATGATGGAAAAGCAGAAACGCACAAAGGCTGAACCATGTGTAGTGGAGCTTCATAACGAATCAGGATTTAGCAATTCATCAATGCCACCCAGTAAAGGAAATGATCCCATTGATGAGGATGTAGACATTGTTGGTGGGAATGACCCCCCTGTTTCAAGCTATCCTCCAATAGAGATAGAAAAAGATGCAGTTCGTAGGGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGGTTCTTCATCTAGTGATTCTGGCTCAGAAAGCTTGTCGGGAAGTGAATCTAATGCTGCTAAAGCTTTAGATAGTAATGTGGCTCCAAAGGAAATTTTGTGTTCTGAAACAAATGTGGATCGGAAGCAAAATGAACTTGGTGATTTAGAAATTGGAAATTATGAAGAAAATGGGATTGATCTAGTTGAGCAAACCACCCAGGCCAATACAAACACTATCGAGTCAGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTATTAAGGAACCGTTTTGCTGACACAATACTGAAAGCTCGAGAGAAGGCACTTGAAAAGGGTGACAAACGGGATCCTGAAAAAGTGCGAATGGAAAGGGAGGAACTTGAAAGACAACAAAGAGAAGAAAAAGCCCGGTTGCAAGCAGAGGCAAAAGCTGCAGAGGATGCTCGCAGGAAGGCTGAAGCTGAAGCTGCGGCCGAAGCTAAGAAGAAAAGAGAGTTGGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAAGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTGGAGATGCTTAGGGCTTCCAACGATGAGCACCTACCGAACTTCACAGAGGAGTCAAGCCCAGAACATTCTCAAAATGGATTTGGCAGTTTCAAGCTTCAAGGTAGTAACCCCTTAGAACAGCTTGGTTTGTACATGAAGATGGACGAGGAAGATGAAGAGGAAGAAAGTGAACCACCCCAAAGTGTTAATAAGCCAGCAAACGATGTTGAAGAAGGGGAAATCGATTAG 2742 43.95 MPSSVQHITFCCRKKSNRHVVDVPIKLSSLAGFSSLRGLVRIASDGLCSRSRVSFRGVYLVLGLDSAFAVFRFFSPSRVFLSFSFCFSQRRERKDEIVNLFHELEIPTNGNPCVHWSTTEGLRCPDKLLGINPMAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRISMNADGFDCFGAPLQVFSLSTLSRSERKDLEIRLKLELEQVRLLQKKASNVSSIFAVSSSSNIQSSSDQHRGAPPETFNRLSEVSVPPAKKPLPSGRNGPSAKRSSSGRFESAKPAAVSASSTASLKQCEQLLQRLMSHTFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKFFEVRWKTIEKKLPVTSEEQRQVPSATFVPKETESTLPVPPSKKTKIPTNDPDVQPTSVVRIMTEQEKHKLSVELEALLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFALRKLLDDYMMEKQKRTKAEPCVVELHNESGFSNSSMPPSKGNDPIDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESGSSSSDSGSESLSGSESNAAKALDSNVAPKEILCSETNVDRKQNELGDLEIGNYEENGIDLVEQTTQANTNTIESDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEAKKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDEHLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKMDEEDEEEESEPPQSVNKPANDVEEGEID 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30132141 30139095 - CaPI482276_06g019180.1 Cam06g1918 130218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1918 913 FunFam Transcription factor GTE4 313 448 - -
Cam06g1918 913 MobiDBLite consensus disorder prediction 447 484 - -
Cam06g1918 913 Coils Coil 239 259 - -
Cam06g1918 913 Gene3D - 319 454 IPR036427 GO:0005515(InterPro)
Cam06g1918 913 Pfam Bromodomain extra-terminal - transcription regulation 492 553 IPR027353 -
Cam06g1918 913 MobiDBLite consensus disorder prediction 692 727 - -
Cam06g1918 913 MobiDBLite consensus disorder prediction 751 812 - -
Cam06g1918 913 CDD Bromo_plant1 338 435 IPR037377 -
Cam06g1918 913 MobiDBLite consensus disorder prediction 575 658 - -
Cam06g1918 913 SUPERFAMILY Bromodomain 317 443 IPR036427 GO:0005515(InterPro)
Cam06g1918 913 MobiDBLite consensus disorder prediction 694 721 - -
Cam06g1918 913 ProSiteProfiles NET domain profile. 482 563 IPR027353 -
Cam06g1918 913 Gene3D - 487 563 IPR038336 -
Cam06g1918 913 SMART bromo_6 330 440 IPR001487 GO:0005515(InterPro)
Cam06g1918 913 Coils Coil 765 813 - -
Cam06g1918 913 MobiDBLite consensus disorder prediction 446 484 - -
Cam06g1918 913 MobiDBLite consensus disorder prediction 841 913 - -
Cam06g1918 913 ProSiteProfiles Bromodomain profile. 349 421 IPR001487 GO:0005515(InterPro)
Cam06g1918 913 MobiDBLite consensus disorder prediction 855 874 - -
Cam06g1918 913 Pfam Bromodomain 341 425 IPR001487 GO:0005515(InterPro)
Cam06g1918 913 MobiDBLite consensus disorder prediction 624 657 - -
Cam06g1918 913 PRINTS Bromodomain signature 352 365 IPR001487 GO:0005515(InterPro)
Cam06g1918 913 PRINTS Bromodomain signature 368 384 IPR001487 GO:0005515(InterPro)
Cam06g1918 913 PRINTS Bromodomain signature 384 402 IPR001487 GO:0005515(InterPro)
Cam06g1918 913 PRINTS Bromodomain signature 402 421 IPR001487 GO:0005515(InterPro)
Cam06g1918 913 PANTHER TRANSCRIPTION FACTOR GTE8 215 892 IPR052442 -
Cam06g1918 913 MobiDBLite consensus disorder prediction 275 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1918 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2472 Cam-Chr1:36463366 Cam06g1918 Cam-Chr6:30132141 4.00E-39 dispersed
Cam01g2631 Cam-Chr1:37849597 Cam06g1918 Cam-Chr6:30132141 1.30E-09 dispersed
Cam06g1918 Cam-Chr6:30132141 Cam10g0956 Cam-Chr10:21550370 2.70E-48 dispersed
Cam05g1466 Cam-Chr5:18039776 Cam06g1918 Cam-Chr6:30132141 7.40E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47