Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1930 ATGGCGGAGAGCTTTCCAATTCCAAACCTTCAATTCATCACTCTCCTTCTCCTCAGTATCATCTTCCTCGCGCATAGTTACCAGATTCGGCTCGATGAACACCAGCCTCTCTCCAAAATTGATGTCTACAAGGCTACTCTTGCACTCCGAAATACCGCCTCCATTAGAGCCTCGCCGCTTGTTCTTGGCCTCAATGGCGAGGATACTGCGTGGGTGACTGTCAAGTTCATACATCCTGAACCCTCTGCAGATGATTGGATAGCAGTGTTTTCTCCTGCGAAGTTCAACACAACAACGTGTCCTAGTTCAAATAAAAGGGTTCAAACTCCATTAATCTGCTCAAGTCCGATAAAGTTTAATTATGCAAACTACTCAAATCCAAATTATGCGAAGACAGGAAAAGCTTCTTTGGTGTTCCAATTGATCAATCAGCGAGCAGATTTTTCATTTGCTTTATTTTCAGGAGGTCTTTCAAATCCCAAACTTATTGCTGTTTCAAATCCCTTATCATTTAAGAATCCTAAAGCACCATTGTTTCCTCGCCTTGCACATGGCAAACTGTGGAATGAAATGACAGTAACCTGGACAAGCGGGTATGATATAAGTGAAGCTAGTCCATTTGTTGAATGGGGTCTAGAAGGGGAAACGCGGACAAGATCCCCAGCTGGCACACTGACGTTTAGCAGGAACAGCATGTGTGATGCACCTGCACGTACTGTTGGTTGGCGTGATCCTGGTTTCTTTCATACGAGTTTCCTACAGAACTTATGGCCAAACTCTGTGTATACGTACAGAATGGGCCATCGCTTGCTTAGTGGATCATATATTTGGAGCAAGAGCTATTCATTCAAGTCATCACCCCATCCTGGAGAAGAATCATTACAGCGTGTCATTATATTTGGTGACATGGGGAAGGGACAACGCGATGGCTCAAACGAGTATAGCAACTATCAGCCTGGAGCATTAAACACTACTGATCAGCTCATTAAAGACTTGGACAATATAGACATTGTTTTCCATATCGGAGACCTATCTTATGCAAATGGGTATCTCTCAGAGTGGGACCAATTTACTGCACAGGTGGAGCCCATTGCATCCAGGGTCCCCTACATGGTTGCAAGTGGTAACCATGAGCGTGACTGGCCAAATACCGGGTCCTTCTATGCAAACATGGATTCAGGTGGGGAGTGCGGAGTTCCGGCGGAGACCATGTTCTATTTTCCTGCTGAAAACAGAGCGAAGTTCTGGTATTCGACAGATTATGGATTGTTCCGGTTCTGTATAGCTGACACTGAACATGACTGGCGAGAGGGCTCAGAACAGTACAGATTCATAGAGCAATGCCTTGCATCAGCGGATAGACAAAAACAACCTTGGTTGATATTTGCTGCTCATCGTGTGCTCGGCTACTCTTCCAACGACTGGTATGCGTCACAGGGCTCATTCGAGGAACCCATGGGAAGGGAAAGCCTTCAGAAACTCTGGCAGAAGTATAGGGTCGATATTGCCTTCTATGGCCATGTCCATAACTACGAAAGAACCTGTCCAGTTTATCAGCATCAATGCGTGAATGCAGAAAAAACCCAATATTCAGGCACTATGAATGGCACAATCCACGTAGTGGTTGGTGGAGCAGGGAGTCACTTATCCGCATTCACCCAAGAGATCCCCAAATGGAGCATTTACAGAGACTTCGATTTTGGTTTCGTAAAGTTGACAGCATTCAACCGCTCCTCTCTGCTTTTGGAGTACAAGAAAAGCAGTGACGGAAAGGTTTATGATTCCTTTACCATTTCAAGGGACTACCGAGACGTCTTGGCCTGTGTTCCCGACAGTTGTCAACCCACAACTTTGGCTGCTTGA 1863 45.57 MAESFPIPNLQFITLLLLSIIFLAHSYQIRLDEHQPLSKIDVYKATLALRNTASIRASPLVLGLNGEDTAWVTVKFIHPEPSADDWIAVFSPAKFNTTTCPSSNKRVQTPLICSSPIKFNYANYSNPNYAKTGKASLVFQLINQRADFSFALFSGGLSNPKLIAVSNPLSFKNPKAPLFPRLAHGKLWNEMTVTWTSGYDISEASPFVEWGLEGETRTRSPAGTLTFSRNSMCDAPARTVGWRDPGFFHTSFLQNLWPNSVYTYRMGHRLLSGSYIWSKSYSFKSSPHPGEESLQRVIIFGDMGKGQRDGSNEYSNYQPGALNTTDQLIKDLDNIDIVFHIGDLSYANGYLSEWDQFTAQVEPIASRVPYMVASGNHERDWPNTGSFYANMDSGGECGVPAETMFYFPAENRAKFWYSTDYGLFRFCIADTEHDWREGSEQYRFIEQCLASADRQKQPWLIFAAHRVLGYSSNDWYASQGSFEEPMGRESLQKLWQKYRVDIAFYGHVHNYERTCPVYQHQCVNAEKTQYSGTMNGTIHVVVGGAGSHLSAFTQEIPKWSIYRDFDFGFVKLTAFNRSSLLLEYKKSSDGKVYDSFTISRDYRDVLACVPDSCQPTTLAA 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30253341 30260129 - CaPI482276_06g019300.1 Cam06g1930 130230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1930 620 Gene3D - 291 604 IPR029052 -
Cam06g1930 620 Pfam Purple acid Phosphatase, N-terminal domain 182 284 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cam06g1930 620 Pfam Iron/zinc purple acid phosphatase-like protein C 536 595 IPR025733 -
Cam06g1930 620 Gene3D - 180 288 - -
Cam06g1930 620 CDD MPP_PAPs 295 600 IPR041792 -
Cam06g1930 620 PANTHER PURPLE ACID PHOSPHATASE-RELATED 34 603 - -
Cam06g1930 620 SUPERFAMILY Metallo-dependent phosphatases 296 611 IPR029052 -
Cam06g1930 620 SUPERFAMILY Purple acid phosphatase, N-terminal domain 154 287 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cam06g1930 620 Pfam Calcineurin-like phosphoesterase 296 511 IPR004843 GO:0016787(InterPro)
Cam06g1930 620 Pfam Fn3-like domain from Purple Acid Phosphatase 55 173 IPR040974 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1930 K22390 - - csv:101214303 1217.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0770 Cam-Chr1:8577707 Cam06g1930 Cam-Chr6:30253341 5.90E-90 dispersed
Cam01g0771 Cam-Chr1:8592099 Cam06g1930 Cam-Chr6:30253341 1.20E-95 dispersed
Cam06g1930 Cam-Chr6:30253341 Cam08g1493 Cam-Chr8:21168393 1.00E-261 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g112 Blo04g00867 . . . . . Bma06g00081 . . . Cma10g00063 . Car10g00050 . . . . Bhi02g00516 . . . . . . Cla06g01740 Cam06g1930 Cec06g1980 Cco06g1984 Clacu06g1886 Cmu06g1828 Cre06g2643 . Cone16ag0269 . . . . . . . . . Bda14g01365 . . Bma03g01255 . . . . . . . . . . . . . . . . . Cla04g00983 Cam04g1023 Cec04g1147 Cco04g1211 Clacu04g1052 Cmu04g1039 Cre04g1093 Lsi06g01639 Csa01g00058 Chy02g02661 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007476 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 1 1 2 36