Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1953 ATGGCTGGCTGTGGCAAAAGGAGTTCTCAACTCAACGTTCACCAGCATGAACCCACTCTGATCACTCCCGCAGAGGAAACGCCAAAGGGTCTCTACTTCCTCTCAAACCTTGACCAGAACATTGCAGTCATCGTCCGTACCATTTACTCCTTCAAATCAGAGTCCAGAGGCAATGAAGACGCAGCCCAAGTCATTAAAAATGCTCTTTCCAAAGTGCTTGTCCACTACCATCCCCTTGCTGGGCGCCTCACTCTCAGCTCCGACAAGAAGCTCATTGTGGATTGTACGGCCGAGGGTGCTGTCTTTGTGGAAGCTGAAGCTGACTGTTCCATTGAAGACATTGGAGATATAACCAAGCCTGATCCCGACACTCTTGGCAAGCTCGTTTATGACATTCCTGGTGCTACCAACATTCTTCAGATGCCTCCTCTTGTAGCCCAGGTGACTAAGTTCAAATGTGGTGGATTCGTTGTGGGGTTGTGTATGAATCATTGTATGTTTGATGGGATTGGGGCAATGGAATTTGTGAATTCGTGGGGTGAAACGGCAAGGGGTTTGCCTTTGGCTGTTCCGCCGTTTCTAGATAGAAAAATTCTGAAAGCAAGAGAGCCGCCGGTGTTTGAGTTTCCTCACCGGGAATTTGCTGAGATAGAAGATGTATCCAACACTTGTAAGCTTTATGGAGATGAGGAGATGCATTATCGGTCCTTCTGCTTTGAACCGGAGAAACTGAATAAGCTCAAACAGAGAGCGTTGGAAGATGGGGCTTTGAAGAAATGCACAACGTTTGAAGCCCTATCGGGATTTGTGTGGAGGGCAAGAACAGAGGCTCTACGAATGCAGCCAGATCAACAAACAAAGCTTCTCTTCGCCGTCGACGGACGATCTAGGTTTCAGCCCCCAATACCGAAAGGGTACTTTGGAAACGCCATCGTTTTAACCAACTCGCTATGCAGCGCCGGCGAGCTTCTGGAAAATCCACTGTCGTATGGGGTGGGGCTGGTTCAGAAGGCGGTGGAGATGATCACGGACAGCTACATGAGGTCGGCCATCGATTTCTTTGAAGCGACGAGATTAAGGCCTTCTCTGGCGGCGACTCTGTTGATCACAACTTGGTCGAGGCTAGGATTCCACACGACGGACTTCGGGTGGGGGGAGCCGGTGTTTTCAGGGCCGGTGGCGTTGCCGGAAAAAGAGTTCACCGTCACCGTCGTTTTCCTCCGCCGAAACCTCTGTTCAAAACTGATACATCCGTGTCTGAGAGCGAAGGCATCGGCCTTTTGTCTTACTCGGCACGCACCCATGGAAACTAGTGTTAAGCAGGAACTTATTGAACCTTTACGCGCGCAAGGAACGAGCAACAATCCCGAGGCATCAAATGTGTCTCTCTCGTTTATTGAGCTCAGTAGTGACAGCGAGTCGGATTCGGAAGATTCGGAGCAAGAAGTAGTTGACGGAATTTTGGGAGAAGGTACGCGAAGCATCGGGCTCCCAAACGGCGTCGATGGAGGGTTCTCGAAGAAGAGGAGGCTGAACGAGTTGGAAGTTGTTAAACCTCTAGGTTTTCTTCCGCCCGCGGCGCTGGACGAGAAGAATTCCATGGCGGTTATTTTGCCCTCGTCAGCAGAGGCGTGTACTGGACAAGAGATGAGGACTTCGAACGCAAATGGTTCAGCCTGCAAACAGTTTTGGAAGGCAGGAGATTATGAAGGAGCTCCTTGCAGTAATTGGGATTCATCATCGGGTGGCATGGACCACGTTAGGGTTCACCCTAAGTTTCTGCATTCTAATGCGACCAGTCATAAGTGGGCTCTGGGAGCTTTTGCTGAGTTATTGGACAACTCGTTAGATGAGGTTTCCAACGGAGCTACTCATGTTAATATAGACATGCTTGTGAATAAGAAAGACGGGACCAAAATGTTATTAGTTGAAGATAATGGTGGTGGGATGAGCCCTGACAAAATGCGTCACTGCATGTCATTGGGTTATTCAGAGAAAACCAAATTAGCAAACACCATTGGACAATATGGTAATGGTTTTAAGACCAGTACCATGAGACTTGGAGCAGATGTAATTGTATTCTCACGTTGTGGTGGACAATATGGGAAAAGTGGCACGCAGAGCATTGGATTACTATCCTATACATTTTTGAGAAGCACTGGAAAGGAGGATATCGTAGTTCCAATGCTTGACTATGAAAGGAAGGGAGGTGAATGGGCCAAGATAGTGCGATCTTCTCTTAGTGATTGGAACAAAAATGTGGAAACAATCGTTCAGTGGTCTCCGTTTTCTAATGAAGCTGAACTTCTCCGTCAGTTTTATTTGATGAAAGATCATGGAACCCGCATTATAATATATAACCTCTGGGAAGACGACCAGGGGCAGTTGGAGCTGGATTTTGATACTGACCAACATGATATCCAAATCAGAGGCGTCAACAGAGATGAGAAAAGTATACAAATGGCAAAAAAATTTCCCAACTCTCGGCACTTCTTGACTTATCGGCATTCTTTGAGGAGTTATGCATCCATTCTTTATTTGAGGCTCCCTCCTGGCTTTCGCATCATTCTTCGTGGGAGAGATGTAGAACACCATAACATTGTGAATGATATGATGATGTCTCAAGAGGTCACGTACAGACCTCAGCCAGGTGCTGAGGGGGTCGGCAAAGATACAAATATGGTTGCTGTTGTGACCATTGGGTTTGTGAAGGATGCAAAGCATCATATAGATGTTCAAGGATTCAATGTTTATCATAAGAATCGGCTCATCAAGCCGTTTTGGAGGCTTTGGAATGCTTCGGGAAGTGATGGTCGTGGAGTTATAGGTGTTCTAGAAGCAAATTTTGTTGAACCTGCCCACGATAAGCAGGGGTTTGAGCGAACAACTGTTCTTGCAAGACTTGAAGCACGGTTGATACAGATGCAGAAGACTTACTGGGGTTCCTACTGTCATAAGATTGGCTATGCTCCAAGACGAATTAATAAACCTGCCAATCTGTCTCCGGATAGAGAAAGTTCCCCGGATGATTATTCTTCCCGGGCTTCACCTCAATCAAAAAAGAAGTTTACTACATTAAGTGGGAAGAAACCTGATAAAGTCTATTCAGGCAAAGAATCAGAGAAGTTTCAGAAAACAAAGGACTTTAGATATGGGAATGTGCATTCAAGTAAAGACAAAAACAGTAGTATGACCCCTGACCCTGAGAAATCGGGGATCAGACCATGTTCCTCTGAGCCACCTTCACCTTCTGGACTAGAAGTTAGGGTTGATAATCCGCATGGAGGACAAGCAAACGGTACTGGCAATGAGACATTTCAGGGAAATGATGTTTCAATGACAATGAACGCGTCTTCAAATGGAGGTGTCAGTAAAGCTCAGCAAGGTGGATTGGGTAGAAGAGGACCCCAATTGAAGGGAGGAGATGTAAACGATAGCGAGCATTCCCTTTCAAGTTCTGATTTCCACATGCTACAGCAGTTGAAGGAAGAAAATAAAGAATTGAAGGAGAGATTACAGAGAAAGGAAGCTGATCACGACAAATTGCAGCATGAAAGAGAGAGGTGCAAATCACTTGAGGCTCAGCTTAAAGCAGCAGAGCTTAAAATTGAGGAATTGAATAAAGAACAAGAAAGCCTAATAGATATTTTCTCTGAAGAGAGAGATCGAAGAGAAACCGAGGAGCGAAATCTGCGAAAAAAGCTTCAGGGTAGTAAAAGTAGATTTAGGAATGGCGCATACGGTGTTCCTGCAAGGTAG 3759 46.16 MAGCGKRSSQLNVHQHEPTLITPAEETPKGLYFLSNLDQNIAVIVRTIYSFKSESRGNEDAAQVIKNALSKVLVHYHPLAGRLTLSSDKKLIVDCTAEGAVFVEAEADCSIEDIGDITKPDPDTLGKLVYDIPGATNILQMPPLVAQVTKFKCGGFVVGLCMNHCMFDGIGAMEFVNSWGETARGLPLAVPPFLDRKILKAREPPVFEFPHREFAEIEDVSNTCKLYGDEEMHYRSFCFEPEKLNKLKQRALEDGALKKCTTFEALSGFVWRARTEALRMQPDQQTKLLFAVDGRSRFQPPIPKGYFGNAIVLTNSLCSAGELLENPLSYGVGLVQKAVEMITDSYMRSAIDFFEATRLRPSLAATLLITTWSRLGFHTTDFGWGEPVFSGPVALPEKEFTVTVVFLRRNLCSKLIHPCLRAKASAFCLTRHAPMETSVKQELIEPLRAQGTSNNPEASNVSLSFIELSSDSESDSEDSEQEVVDGILGEGTRSIGLPNGVDGGFSKKRRLNELEVVKPLGFLPPAALDEKNSMAVILPSSAEACTGQEMRTSNANGSACKQFWKAGDYEGAPCSNWDSSSGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVSNGATHVNIDMLVNKKDGTKMLLVEDNGGGMSPDKMRHCMSLGYSEKTKLANTIGQYGNGFKTSTMRLGADVIVFSRCGGQYGKSGTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGGEWAKIVRSSLSDWNKNVETIVQWSPFSNEAELLRQFYLMKDHGTRIIIYNLWEDDQGQLELDFDTDQHDIQIRGVNRDEKSIQMAKKFPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGRDVEHHNIVNDMMMSQEVTYRPQPGAEGVGKDTNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKTYWGSYCHKIGYAPRRINKPANLSPDRESSPDDYSSRASPQSKKKFTTLSGKKPDKVYSGKESEKFQKTKDFRYGNVHSSKDKNSSMTPDPEKSGIRPCSSEPPSPSGLEVRVDNPHGGQANGTGNETFQGNDVSMTMNASSNGGVSKAQQGGLGRRGPQLKGGDVNDSEHSLSSSDFHMLQQLKEENKELKERLQRKEADHDKLQHERERCKSLEAQLKAAELKIEELNKEQESLIDIFSEERDRRETEERNLRKKLQGSKSRFRNGAYGVPAR 1252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30394940 30412754 + CaPI482276_06g019530.1 Cam06g1953 130253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1953 1252 MobiDBLite consensus disorder prediction 994 1186 - -
Cam06g1953 1252 Gene3D - 7 216 IPR023213 -
Cam06g1953 1252 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 540 1213 IPR045261 GO:0005634(PANTHER)|GO:0016887(InterPro)
Cam06g1953 1252 FunFam Tryptamine hydroxycinnamoyl transferase 218 410 - -
Cam06g1953 1252 Pfam Transferase family 13 401 - -
Cam06g1953 1252 Coils Coil 1155 1223 - -
Cam06g1953 1252 MobiDBLite consensus disorder prediction 1144 1158 - -
Cam06g1953 1252 Pfam Morc6 ribosomal protein S5 domain 2-like 836 980 IPR041006 -
Cam06g1953 1252 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 606 726 - -
Cam06g1953 1252 Gene3D - 224 414 IPR023213 -
Cam06g1953 1252 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 606 808 IPR036890 -
Cam06g1953 1252 MobiDBLite consensus disorder prediction 1025 1055 - -
Cam06g1953 1252 FunFam MORC family CW-type zinc finger protein 4 590 794 - -
Cam06g1953 1252 MobiDBLite consensus disorder prediction 1000 1024 - -
Cam06g1953 1252 MobiDBLite consensus disorder prediction 1221 1235 - -
Cam06g1953 1252 MobiDBLite consensus disorder prediction 1096 1126 - -
Cam06g1953 1252 Gene3D - 591 807 IPR036890 -
Cam06g1953 1252 MobiDBLite consensus disorder prediction 1221 1252 - -
Cam06g1953 1252 MobiDBLite consensus disorder prediction 1159 1186 - -
Cam06g1953 1252 FunFam Spermidine hydroxycinnamoyl transferase 11 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1953 K24135 - - csv:101222073 1358.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0817 Cam-Chr2:10389073 Cam06g1953 Cam-Chr6:30394940 1.20E-65 dispersed
Cam02g0818 Cam-Chr2:10422188 Cam06g1953 Cam-Chr6:30394940 1.20E-57 dispersed
Cam05g1809 Cam-Chr5:26964900 Cam06g1953 Cam-Chr6:30394940 4.50E-36 dispersed
Cam06g1152 Cam-Chr6:22117060 Cam06g1953 Cam-Chr6:30394940 4.50E-60 dispersed
Cam06g1953 Cam-Chr6:30394940 Cam07g1556 Cam-Chr7:30240433 2.30E-191 dispersed
Cam06g1953 Cam-Chr6:30394940 Cam05g2049 Cam-Chr5:29173947 3.10E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g69 . . . . . . . . . . . Cma11g00020 . Car11g00019 . . Cpe04g01628 Bhi02g00471 . . . Hepe09g0031 . . Cla06g01760 Cam06g1953 Cec06g2003 Cco06g2008 Clacu06g1911 Cmu06g1851 Cre06g2664 . . Cone13ag0239 . . . . . . . . Bda14g01346 . Bpe15g00232 Bma03g01239 . . . Cmo11g00020 . . . . . . . . . . . . . . . . . . . . Lsi06g01658 Csa01g00034 . Cme02g02086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002795 1 2 1 1 1 2 1 2 2 2 2 2 1 2 3 1 2 1 1 2 2 1 2 3 2 1 2 4 3 2 54