Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1961 ATGATGGAGATGATTTCCCCTAAACAGCACATTGAGGACATAAGGCGAAGCAAGTTTTCGATAGGAGGGCCGGTGAATCCCTTAACCGAGGATCTCCATCAGGCTGTCAGGAACCTTTCTGCGGAGCTTTACACCAAGGACGTTCACTTTCTCATGGAGCTTATTCAGAATGCTGAAGATAACCAGTACTCCACCTCCGTAAAACCCTCGCTGGAGTTCATTATAACATCTCGAGATGTCACCGCAAGTGGAGCTGCTACCACACTTTTGATTTTCAACAATGAGATTGGTTTCTCTTCTAAAAACATCGACTCCATTTGCAGCGTCGGTCGTTCCACAAAAAAGAACAACCGGGAACGCGGTTATATTGGCGAGAAAGGAATTGGATTCAAAAGTGTTTTTCTGATTACTTCCCAGCCTTACATATTCAGCAATGGATATCAGATACGGTTCAATGAACAACCTTGCCCACATTGTGGGGTTGGGTTCGTTGTTCCTGAGTGGGTTGAAGAGAATCCAATTCTTTGTAACATAAAGGAAATTTACGGGCGACAGTCTATACTCCCAACTACCACAATAGTTTTGCCGTTGAAGGCCGAGAAGATCAAAGCTGTGAAGCAGCAGCTCTCAAGCATTCACCCTGAAGTTCTATTGTTCCTTTCCAAAATCAAGCAACTTTCAGTGAGGGAAGTGAATGAGGATCCCAAGTCCAATACTGTAAATGCAATTGCCATTTCAAGTGAGACAAACTTCGTGTCGAGGAAGAACATTGATGCTGAGTCCTACACTCTCCATCTCTCTTCCGAGGAAGGTGTTGGTGGAGAAATGGATACCCAATGCTCCTACTACATGTGGAAGCAGAAGTTTCCAGTGAAGGGAGAAAATATGGTGGAGCGGAGGAGGGGAGTGGAGGAATTACTTATCATATTGGCTTTTCCAAATGGAGAACGTCTCAACAGAGGAGTCAAGTCCCATGGAGTCTATGCTTTCCTTCCCACCGAGATGATAACCGACTTTCCCTTTATAATTCAGGCAGACTTTGTTTTATCATCATCCAGAGAAACAATTCTCCTCGATAACAAATGGAATCAAGGCATTCTTGACTGTGTTCCCTCTGCTTTTGTCAATGCTTTCGTCTCATTGGTGAAAACTTCGGATGAAGCTCCCTTGTCTTCTTTGGCCCCTATGTTCAACTTCTTGCCCACCACTACATCTTCCTATGATAAGTTGAATGTTGTGAGGGACTTAATCAAGGAAAAGTTGCTCCAAAAAAATATTGTTCCAAGTCATTCACCATTCTTGAAGCAAAGGTTCTTCCAGAAACCTCGTGAAGTGGGTAGAATTATGCCTGCCTTTTGGAATATCTTAATGAAGGCACACACTCAAGGGGTGAGTTTGCTTAATCTATCGTCCCATGGAAAGCACATCTTAAGTTTCTCACTGGATACGAAGGAATACGATCACGTTCTCAGCTTCCTTGGCGTGAAACTAGTTGATGATGAATGGTATGCAAAGTGCCTACAGGGTACCAACATTGTGGAGACTGTGTCTGATGATCTTTATTTGGAGCTTCTACAATTTGTTGCAGAGAATTGGAGTTCAAGATTTCATGTTTCAAGCATGAAGACTGTGCCACTTATAAGATATGTTTGTCTTGATGGGAATGTTTCCCTATGCAGTTTAAACGAGTCCACGCGGATTGGTGGAAGAAAGGTTTGTCTTGCTCGTCATGGCCAGCATTTATCTTGGCTTAGTAAATCGAACATGGAATTGAGATCTTTTTCCAACTGTTCTTTTATGCCAGAAAGCACGCATAAATCCATCAGATCATGTCCTAGGAATAAGGACATGTTGTTGCAATGGCTTCGGGACCAGGTTAAAGTCGATACCATCACTATATTTCAATTCGCTAGGCTCCTTGTCGATTCTCTTGGGAATGATCCACAACATATAATTACCTATTTTCACTTCCTATATCACTCATCATCAAAGCATTATCTGACGGATGTGGAGATTCAGACTTTGTGCAGTGCTATGCCAGTAGTAGACAAGTACGGTAGTGTTATCAAAAATAGGCAGGGGCTTCTCATCCCAGCAGATGGTAGCAAATGGGCAGAATTGCTTGATTCAAATCCTTGGCAAAATTATGGTTATGTTGAGTTGGGAGCTGTATACATCTGCCCAGTCTATTTTGCAGGTGAATCTGTGACTAAAGAACAGCTAATAGGTTTTCTCAAGACCCATATTGGTGCTTCTGATATTCCTACTATTACTCCACCCAATACAGAAATTTCTGTTTTTTCTTCACCACTTACTGTCCAGAATGTGCTTTTGCTATTGAATTGGATTCGTAGCTTGAATACTATGCCTTCCAAGTTTTTGAAATGCATAAAGGAAGGTTGCTGGCTCAGAACTACTTTGAATGGATCTTCTGGCTACAGACCACCATCTCAGTCTTTTGACATCTCTTCGTCATGGTCAAGTATTTTGCGAGGTGGGTCAGTCCTGGTGGATATCCCTCAGATTGATCACAGATTCTATGGTAATGAGTTAAAAGGCTATTCTCAGGAGCTGAAAAAAGTTGGTGTCATGTTTGAGTATGATGAAGTCCTAAAATTTATTGGGAATCACCTCATGTCAGTGGCGACTTTAGCAAGTTTGACAAGAGAAAATGTCATCTCCATGTTAAAATTTATCCGGTTTTTGAAAAATCAATTTCCCGTTGACGGCTTTATCGCAAGCATAAGAAAAGGGACATGGCTCAAGACGCGTCATGGTTATACTTCTCCAGTTGGATCAGTATTGTACACTAAGGAATGGTCAACGGCATCACTTCTGAGCAACATCCCTTTTATCGACGAGGATTACTATGGTGATGAGATACTTTTATTCCGGGAAGAACTTAAATTGCTTGGTGTGGTGGTTTCCTTCCACAAAGTTTCTCAACTTGTTATGGACAATATGAAGCCACCTTCTCAATTAACTTGTCTCGGAGCCGAGGCATTTTTGTTGATTCTTTCCTTTATGGTGGAACACAAGTCAGGTTATTTTCTTGTTAAAACATTCAGAAGTGTGGAATGTGTCAAGACAAACCAAGGCTACAAATCTCCTGGTGAATGTTACTTGTCAGATCCTTCTTGGGGTTGCATTCTACAGGTTTTCACTGGCTTCCCACTAGTTGATTATGATTTTTATGGAAGCCGCATTACGGTTTTCCAGAGGGAACTGAAAAACATGGGGGTGGTGGTTGATTTTGAAGAAGCAGTCAAAACATTTTCTCAAGTGTTCAGGCGAAGAGCGGCTGCAAGCACCCTAACAAAGGAAAGTGCAATATCATTTCTGTCATGCTACAAACAGCTAAAAGAATCAGCTAAAAAGTTTCCTTCAGATCTTAAGAAGTGCATTCATGAGTTAAAGTGGTTGCGGACTCGACTCAGTGATTATAGGTCTCCTAAAGATTGCATATTGTATGGTCCAAGTTGGAAATCTATATCTGCAATTACTCTACTCCCTTTTATCGATGATAGTAAAAACTACTATGGAGACCATATTCATGAATACAAAAAAGAGTTGAAGAGTATGGGAGTCATTACCGACTTTAAAGATGGTGCTCATATGGTTGCTGCTGGGCTTTATCTTCCGGAAGATCCTACTAAAATTACTTCTAAAAGTGTCCATTCACTTTTGGAGTGCATCCGAACTTTGCTGGAGAAGAATCCTTCCTTGCCCGTTGATTTCTCTGTAAAGTTATCTCGGAAATGGTTGAAGACCTCTTATGGTTATAGGTCTCCAAAAGAGAGTTTGCTCTTCGTTCATGAGTGGGATTCTTATCTGAAGCCGACTGATGGGCCTTTCATTGATGAACAATTCTACACATTTGACATCAAGTTGTATGAAAGGGAGCTCAAAGAAATAGGGGTTATAGTTGATTTGGACCATGGATGTCAATTAGTTTCAAGATTTTTAGATTCTCAGGGCCAGTTCTCCACTATTGTACGGATGTATACGTATTTGAGTGCATTCAATTGGGAGCCAGACACTGAAGCTGCTGCAAGTATTTGGGTGCCTGTTGGAGATTCTAATGGACAGTGGATCAACCCAGAAAATTGTGTACTTTTTGACAAGGAGGATCTTTTTGGCTTGCAGTTGACAGTTCTTGAGAGATACTATAAACAAGATTTACTCATGTTCTTTTCCAAAGCCTTTAAAGTAAGATCCAATCCTTCCACTGACGATTACTGCAAACTATGGAAAAGTTGGGAAAGAAATGAAGATAGACTTTCCCATGACAAGTGCTTTAAATTTTGGAAATATGTTGCTAAGCACTTTAATTCAAAAACCGGCCGAGCTTTTAGTGATGCCATTGTCAAGGTGCCTGCAATTTCTGGCTCAGATGAAGTTTTTTTGTTTGATAAGCGTGACGTTTTTATTGGCGATGATATACAACTAAAGGATTTATTTGAACGAGTGTCTCCTCGTCCGATTTTTGTATGGTATCCTCAACCAAGCTCACTTTCCTTGTCTCGGACACGGTTGTTGGAAGTTTATAAGAACATCGGGGTTCGGAATATCTCTGAGTTTGTTCAACGGGGGGAGTCAGCAGTCGTTGATGGAATCAATCTCAAGCAAGTGAATCCAACTGACATTTCAATTGGAAAAGAGCTGATCCGGATCATTCTTGGTTTCTTAGCAGACCCTGCTAAGAAAATTGAAGCAGCAAAGAGGCATGAAATTGTTCGTTGTCTCCTTAATCTTACTGTTCTTGAGATTGGAGAACCTGTCATGATAAACTACAGTTTATCCCTAACTTCAGGAGAGATCATCAGTGCTAATGCAACCCAATTGATACGTTGGGAAAGGGAGAGTTCAAAGCTGTTCACCAAGAAAATGGTAATGTCAGGTGGACATAAGGAGATGATAGAGTATGCTACCTACTTTTCTGAGGTCATATCTGAAGGTGTCCTTTGGGAGTACAGTGATTATATATGTGCATTATCTGAGCTGATCAAGTTGGCATTTGTGTTGAATTTTGATGATGGAGCTGTTAGTTTCATACTGAAATCCAAGAATCTGGAAATCTTGGAGGAGGATGAGGACTTCCTCTCGTCTGCTTTCAGTGAGCAATCTAAGTAA 5133 41.11 MMEMISPKQHIEDIRRSKFSIGGPVNPLTEDLHQAVRNLSAELYTKDVHFLMELIQNAEDNQYSTSVKPSLEFIITSRDVTASGAATTLLIFNNEIGFSSKNIDSICSVGRSTKKNNRERGYIGEKGIGFKSVFLITSQPYIFSNGYQIRFNEQPCPHCGVGFVVPEWVEENPILCNIKEIYGRQSILPTTTIVLPLKAEKIKAVKQQLSSIHPEVLLFLSKIKQLSVREVNEDPKSNTVNAIAISSETNFVSRKNIDAESYTLHLSSEEGVGGEMDTQCSYYMWKQKFPVKGENMVERRRGVEELLIILAFPNGERLNRGVKSHGVYAFLPTEMITDFPFIIQADFVLSSSRETILLDNKWNQGILDCVPSAFVNAFVSLVKTSDEAPLSSLAPMFNFLPTTTSSYDKLNVVRDLIKEKLLQKNIVPSHSPFLKQRFFQKPREVGRIMPAFWNILMKAHTQGVSLLNLSSHGKHILSFSLDTKEYDHVLSFLGVKLVDDEWYAKCLQGTNIVETVSDDLYLELLQFVAENWSSRFHVSSMKTVPLIRYVCLDGNVSLCSLNESTRIGGRKVCLARHGQHLSWLSKSNMELRSFSNCSFMPESTHKSIRSCPRNKDMLLQWLRDQVKVDTITIFQFARLLVDSLGNDPQHIITYFHFLYHSSSKHYLTDVEIQTLCSAMPVVDKYGSVIKNRQGLLIPADGSKWAELLDSNPWQNYGYVELGAVYICPVYFAGESVTKEQLIGFLKTHIGASDIPTITPPNTEISVFSSPLTVQNVLLLLNWIRSLNTMPSKFLKCIKEGCWLRTTLNGSSGYRPPSQSFDISSSWSSILRGGSVLVDIPQIDHRFYGNELKGYSQELKKVGVMFEYDEVLKFIGNHLMSVATLASLTRENVISMLKFIRFLKNQFPVDGFIASIRKGTWLKTRHGYTSPVGSVLYTKEWSTASLLSNIPFIDEDYYGDEILLFREELKLLGVVVSFHKVSQLVMDNMKPPSQLTCLGAEAFLLILSFMVEHKSGYFLVKTFRSVECVKTNQGYKSPGECYLSDPSWGCILQVFTGFPLVDYDFYGSRITVFQRELKNMGVVVDFEEAVKTFSQVFRRRAAASTLTKESAISFLSCYKQLKESAKKFPSDLKKCIHELKWLRTRLSDYRSPKDCILYGPSWKSISAITLLPFIDDSKNYYGDHIHEYKKELKSMGVITDFKDGAHMVAAGLYLPEDPTKITSKSVHSLLECIRTLLEKNPSLPVDFSVKLSRKWLKTSYGYRSPKESLLFVHEWDSYLKPTDGPFIDEQFYTFDIKLYERELKEIGVIVDLDHGCQLVSRFLDSQGQFSTIVRMYTYLSAFNWEPDTEAAASIWVPVGDSNGQWINPENCVLFDKEDLFGLQLTVLERYYKQDLLMFFSKAFKVRSNPSTDDYCKLWKSWERNEDRLSHDKCFKFWKYVAKHFNSKTGRAFSDAIVKVPAISGSDEVFLFDKRDVFIGDDIQLKDLFERVSPRPIFVWYPQPSSLSLSRTRLLEVYKNIGVRNISEFVQRGESAVVDGINLKQVNPTDISIGKELIRIILGFLADPAKKIEAAKRHEIVRCLLNLTVLEIGEPVMINYSLSLTSGEIISANATQLIRWERESSKLFTKKMVMSGGHKEMIEYATYFSEVISEGVLWEYSDYICALSELIKLAFVLNFDDGAVSFILKSKNLEILEEDEDFLSSAFSEQSK 1710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30459545 30466016 - CaPI482276_06g019610.1 Cam06g1961 130261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1961 1710 PANTHER WU:FJ29H11 7 1705 IPR052957 -
Cam06g1961 1710 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32 218 IPR036890 -
Cam06g1961 1710 Coils Coil 41 61 - -
Cam06g1961 1710 Gene3D - 27 222 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1961 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0374 Cam-Chr5:3432606 Cam06g1961 Cam-Chr6:30459545 1.60E-43 dispersed
Cam06g1961 Cam-Chr6:30459545 Cam06g1962 Cam-Chr6:30468512 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g56 . . . . . . . . . . . . . . Sed08g0454 . . Bhi02g00646 Tan09g1740 Cmetu06g1175 . Hepe09g0021 . . Cla06g01769 Cam06g1961 Cec06g2012 Cco06g2018 Clacu06g1919 Cmu06g1860 Cre06g2673 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003517 0 3 0 0 0 2 1 4 2 1 2 2 1 1 2 1 2 1 1 2 1 1 1 2 2 2 2 4 1 3 47