Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1970 ATGGGTGTGTCAAAAGATGGGCAACGACAATCTCCGGTGCCAAGCTTTGTGTATTCTGGCAACAGGGGATGTTTCCAAACCCAAACACTGGTTAGGCGCTTCCCAATTGAAGCTCCGAAAGAGAATATAAAGATGTATTCACCGGCCTTCTACGCGGCTTGCACAGCAGGCGGCATTTTGAGTTGTGGACTCACCCACATGGCTGTCACCCCCCTCGATCTCGTCAAGTGCAACATGCAGATCGACCCAGCAAAGTACAAGAATATCTCGTCTGGTTTTGGAATTCTGCTAAAGGAGCAGGGAGTGAAAGGGTTCTTCCGGGGTTGGGTGCCAACGTTGCTTGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGATTTTACGAGTTCTTCAAGAAGTACTATTCTGATATGGTTGGAACAGAGAATGCAGTCAAGTACAAAACTTTCATATACCTTGCTGGCTCAGCATCTGCAGAAGTGATTGCCGATGTCGCTCTCTGCCCCATGGAGGCCGTCAAAGTTCGTGTCCAGACTCAACCTGGCTTTGCTCGGGGTTTGTCAGATGGCCTTCCAAAGTTTGTCAAGTCTGAGGGTGCTCTCGGACTCTACAAAGGTCTGGTTCCTCTTTGGGGACGTCAGATTCCATATACCATGATGAAATTTGCTTCTTTCGAAACAATTGTTGAGATGCTTTACAAGTATGCCATCCCAAGGCCAAAAGAACAGTGTAGCAAATCTCTGCAGCTTGGAGTGAGCTTTGCCGGAGGGTATGTGGCCGGCGTCCTCTGTGCTGTGGTCTCACACCCAGCCGACAATCTTGTCTCTTTTCTCAACAATGCCAAGGGTGCAACTGCTGGGGATGCTGTCAAGCAGCTGGGAGTATGGGGTCTCTTCACTCGTGGCCTTCCGCTTCGGATTGTTATGATTGGAACTCTTACTGGGTCGCAATGGGGTATATACGACGCGTTCAAAGTTTTCGTTGGACTGCCAACAACTGGTGGCGCTACCCCTGCTCCTGCCGCTAGCAAGTGA 1032 50.1 MGVSKDGQRQSPVPSFVYSGNRGCFQTQTLVRRFPIEAPKENIKMYSPAFYAACTAGGILSCGLTHMAVTPLDLVKCNMQIDPAKYKNISSGFGILLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDMVGTENAVKYKTFIYLAGSASAEVIADVALCPMEAVKVRVQTQPGFARGLSDGLPKFVKSEGALGLYKGLVPLWGRQIPYTMMKFASFETIVEMLYKYAIPRPKEQCSKSLQLGVSFAGGYVAGVLCAVVSHPADNLVSFLNNAKGATAGDAVKQLGVWGLFTRGLPLRIVMIGTLTGSQWGIYDAFKVFVGLPTTGGATPAPAASK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30508909 30510349 - CaPI482276_06g019700.1 Cam06g1970 130270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1970 343 Gene3D Mitochondrial carrier domain 49 327 IPR023395 -
Cam06g1970 343 FunFam Phosphate carrier protein, mitochondrial 49 327 - -
Cam06g1970 343 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 36 335 IPR044677 GO:0005315(InterPro)|GO:0005315(PANTHER)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Cam06g1970 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 146 230 IPR018108 -
Cam06g1970 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 49 133 IPR018108 -
Cam06g1970 343 Pfam Mitochondrial carrier protein 147 234 IPR018108 -
Cam06g1970 343 Pfam Mitochondrial carrier protein 51 136 IPR018108 -
Cam06g1970 343 SUPERFAMILY Mitochondrial carrier 52 322 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1421 Cam-Chr5:16777767 Cam06g1970 Cam-Chr6:30508909 9.90E-151 dispersed
Cam06g1970 Cam-Chr6:30508909 Cam09g1191 Cam-Chr9:13018505 9.80E-12 dispersed
Cam06g1970 Cam-Chr6:30508909 Cam09g1190 Cam-Chr9:13012304 2.90E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1970 K15102 - csv:101220423 610.142