Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g1977 ATGGCCTCCTCCGAGGTTTCGATCAACCCCAATTCCGCCTCCTTCAACGACCATGCCGATTCTACCAAAGACACCTCCGATCCACCCAACGCTCTCTCTGCCAGGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGCCCTCTCGTTTCGGTTCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACAAGTCAAGTGGCAGACCAGCAGATGCCTGTATATAACCTTCCATGGAAGATCCTCTGCCGCGTTATTAATGTGCACTTAAAGGCCGAACCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGAATGCTGTGGACAAGGAACCCCCACCTCCTCCCCCGCGGAGATTTCATGTGCATTCCTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCTACTCAGGAGTTGGTTGCAAAGGATTTGCATGGAACAGAATGGCGTTTTCGTCATATATTTCGAGGGCAACCGCGTAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGCGTTGGTGTAAGGCGTGCCATGAGACAACATGGCAACGTCCCATCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCTATTTCCACAGGCACGATGTTCACTGTCTACTATAAACCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAACAGAGATTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGACGAGACTTCTACTATTTCTCGTCCGGAGAAAGTTTCACCATGGAAAATTGAGCCTGCCCTTGCTCCTCCTGCACTGAACCCCCTTCCTATGACTAGACCTAAGAGGCCTCGATCAAATATGGTATCTACATCCCCCGATTCCTCTGTTCTTACACGAGAAGGTTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATCGATAGTAATGATCCAGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGGAGTGAGCCAACTTATGCCGATCTTCTGTCAGGTTTTGGAACTAATATTGATTCATCTCATGGTGTTCGAGCTGGCATGGGAGATTCAGCAGTAGTCACTGTTAATTCAATCAGAAAGCATGCCATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGCCTTGCCTTCTGGTCTCTCGCTCAACCTGGTTGACTCTAGTCAGAGGGGTCATATTCAGGCTGGTGACTTATCTTATCAAGGGAGAGGAAATGCTACCTTCAATGGATTTGGTGATCATTCCATGGCCCATTGTCATAGAACAGAACAGCCTCATGCAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGACTATCCAGTTCATTCAACTGAACTGATGTCAAAACCTATATTATTTCAGAACCAAGATATACTGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCAATAAAAATCCTGCCATTCCAGACCCTGCAGGACTGAGTAGAAATATGATGAACGAGGCAGCAGATGTTATGCATCCTAATATACATCAAATCCATTCAAACGAGTCTGACCTGAAGGCTGAACTATCTAGAGGTTCAAAATTGGCTGATAAATCCCTTGCCATCAATGAGGCTGATAAGTTGCAGCAACCATGCGCACATAACTCGAAGGACACACACAGCAAATCACAGGGTACTTTAGCAAGGAGTTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGTGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACGGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGTGATGAGAATCCATCCATTGAAGGGGAAGAAGCAAAAGAGATCAAAAGTCAGGCAGTACCTTCGATGTCAGTACCCGAGAGTTTTTGGTGCGGTACGGAAGGAGTTGAGCAGAGTAATGCAGCGAGGCCGGAAGGTTGCGGCCTTATGTTAAAGGTAGATGGTAGAAATGATGTATTGAATTTTGGACGTGCAAAAGAAGAGAACACGCTGACACGAATGGAAATTTGTTCAAAATGGGATTGCAACATGAAGCTGCTACTGCTTCTTGGATTTCGCTACTTGAAAGCGAAGGGGGTCAATGCCATGCAAATATCTCGAATAAATTATAAAGGTAAGGACAAACAAGCGTATGACAAAGAAGAATATGTGATCTTGCTATTGGGACTATCAGTGGATATCATGGCTAGAGTTCTGGTTCAGTCGACAAATATTCCTGGTTTGGTCGGTGGAAGAAAGAATGGCCTATCATCAAGGGGGTCAGCAAATGTAAAACGGGTTGTTAAAATGATGGCCACCGTACATGCACCTGGTTTGACAATAAGAAGTTTCTCTGGACTCAGGGGATTTAATTCTTTGGATAACATGTTGAGAACTGGACAAAATTTTCATTCTAAGATGGCCATTACAATCTCTTCTAGGCGACGAAAGGCTAGCAGGTGTGCTCCAAGAGCTATGTTTGAGCGGTTCACAGAAAAGGCAATTAAAGTCATCATGCTTGCCCAGGAGGAAGCGAGGCGGCTTGGTCACAATTTTGTTGGCACAGAGCAGATACTTTTAGGTCTTATTGGCGAAGGCACTGGCATCGCTGCTAAGGTTCTTAAATCTATGGGAATTAATCTTAAAGATGCGCGCGTGGAGGTGGAGAAGATAATTGGTAGGGGCAGCGGCTTTGTTGCTGTAGAAATTCCATTCACTCCTCGGGCAAAGCGTGTTTTGGAACTTTCTCTTGAAGAAGCTCGCCAACTTGGCCACAATTATATTGGGTCAGAGCACTTGCTTCTGGGACTACTTCGTGAAGGTGAGGGCGTCGCAGCTCGTGTTCTCGAAAACCTAGGTGCTGATCCTAGTAACATTCGCACTCAGGTAATTAGAATGGTTGGTGAGAGTACGGAGGCTGTTGGTGCTGGTGTTGGAGGAGGAAGCAGTGGGAACAAGATGCCAACCCTGGAAGAGTATGGCACAAATTTAACTAAGCTGGCTGAAGAGGGTAAACTAGATCCTGTTGTTGGAAGGCAGCAGCAAATAGAACGTGTAACCCAGATTTTGGGTCGGCGGACAAAAAATAATCCTTGCCTCATTGGCGAGCCTGGTGTTGGGAAAACTGCTATTGCTGAAGGTCTGGCACAAAGGATTGCTAATGGGGATGTCCCTGAAACAATAGAAGGAAAGAAGGTTATAACCCTGGATATGGGCCTTCTCGTAGCTGGCACAAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAACTGATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTTATTGATGAGGTGCACACATTAATTGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAATATATTGAAACCTGCCCTCGCAAGAGGTGAACTGCAGTGCATTGGAGCCACGACATTGGATGAATACAGGAAGCACATTGAAAAAGACCCAGCCTTAGAAAGGAGATTTCAGCCAGTCAAAGTGCCGGAACCATCTGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGGGAGCGGTATGAAATCCACCACAAACTTCGTTACACAGATGAAGCACTAGTAGCTGCTGCGCAGCTGTCATACCAGTACATCAGTGATCGGTTCTTGCCTGATAAGGCAATCGACTTGGTTGATGAAGCAGGTTCTCGGGTTCGCCTGCGTCATGCTCAACTACCTGAGGAAGCCAGGGAGCTTGAGAAAGAGCTGAGGCAGATCACAAAGGAGAAGAATGAGGCTGTTCGAAGTCAAGACTTTGAGAAGGCTGGAGAATTACGTGACAGAGAAATGGAACTTAAGACTAAGATCTCTGCTCTAGTAGACAAGGGCAAGGAGATGAGCAAGGCTGAAAGCGAGGCAGGAGATGTAGGCCCTGTTGTGACTGAGGTCGATATTCAGCATATTGTCTCCTCCTGGACTGGCATTCCTGTCGAGAAAGTATCTACTGACGAATCTGATCGCCTCCTCAAAATGGAAGAGACCCTCCATAAGAGGGTCATTGGTCAAGATGAAGCAGTTAAAGCCATCAGCCGTGCCATACGGCGAGCTCGGGTTGGTCTGAAGAATCCCAATCGTCCAATTGCAAGCTTTATATTTTCTGGTCCAACTGGTGTTGGTAAATCTGAGTTAGCAAAAGCGTTGGCTGCATACTATTTTGGGTCTGAAGAAGCAATGATTCGCCTTGACATGAGTGAATTTATGGAGAGGCATACTGTCTCCAAGCTCATTGGTTCCCCTCCTGGTTATGTTGGTTACACGGAGGGTGGTCAATTAACTGAGGCTGTTCGTCGTCGTCCATACACAGTGGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTGTTCAACATGATGCTTCAAATTTTGGAGGATGGAAGGTTGACAGATAGTAAGGGCAGGACTGTAGACTTCAAAAATACACTTTTGATAATGACATCAAATGTGGGAAGCAGTGTTATAGAGAAGGGAGGTCGCAGAATAGGGTTTGACCTTGATTATGACGAGAAGGATAGTAGTTACAACCGGATCAAGAGCTTGGTGACAGAGGAACTGAAACAATACTTCAGGCCTGAGTTTTTGAATAGGTTGGATGAGATGATTGTCTTCCGTCAGCTCACAAAACTGGAGGTGAAGGAGATTGCGGATATAATGCTGAAGGAGGTATTTGATAGGTTAAAAGCAAAAGAAATAGACCTTCAAGTGACAGAAAGATTTAGAGATAGGGTGGTGGAGGAAGGATATAACCCAAGCTACGGTGCGAGACCATTGAGAAGGGCAATAATGAGACTTTTGGAGGACAGCATGGCAGAGAAGATGCTGGCAAGGGAGATCAAGGAGGGTGACTCGGTAATAGTTGATGTCGATTCAGACGGAAATGTCACAGTGCTCAACGGCAGCAGCGGTGCTCCCGAGTCCCTGCCGGATGCCATCCCCGTGTAA 5637 45.8 MASSEVSINPNSASFNDHADSTKDTSDPPNALSARDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTSQVADQQMPVYNLPWKILCRVINVHLKAEPDTDEVFAQITLLPEANQDENAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVSTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDSNDPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADSWIPPGRSEPTYADLLSGFGTNIDSSHGVRAGMGDSAVVTVNSIRKHAMDQDGKFNFLGGSSWSALPSGLSLNLVDSSQRGHIQAGDLSYQGRGNATFNGFGDHSMAHCHRTEQPHANWLMPPPSSHFDYPVHSTELMSKPILFQNQDILKPKDGNCKLFGISLNKNPAIPDPAGLSRNMMNEAADVMHPNIHQIHSNESDLKAELSRGSKLADKSLAINEADKLQQPCAHNSKDTHSKSQGTLARSCTKVHKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGDENPSIEGEEAKEIKSQAVPSMSVPESFWCGTEGVEQSNAARPEGCGLMLKVDGRNDVLNFGRAKEENTLTRMEICSKWDCNMKLLLLLGFRYLKAKGVNAMQISRINYKGKDKQAYDKEEYVILLLGLSVDIMARVLVQSTNIPGLVGGRKNGLSSRGSANVKRVVKMMATVHAPGLTIRSFSGLRGFNSLDNMLRTGQNFHSKMAITISSRRRKASRCAPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMELKTKISALVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKEIDLQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLPDAIPV 1878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30542653 30559727 - CaPI482276_06g019770.1 Cam06g1977 130277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g1977 1878 SUPERFAMILY Double Clp-N motif 1049 1190 IPR036628 -
Cam06g1977 1878 Gene3D - 1771 1867 - -
Cam06g1977 1878 SMART AAA_5 1248 1388 IPR003593 GO:0016887(InterPro)
Cam06g1977 1878 SMART AAA_5 1591 1772 IPR003593 GO:0016887(InterPro)
Cam06g1977 1878 MobiDBLite consensus disorder prediction 1 29 - -
Cam06g1977 1878 Coils Coil 1454 1481 - -
Cam06g1977 1878 ProSitePatterns Chaperonins clpA/B signature 2. 1625 1643 IPR028299 -
Cam06g1977 1878 MobiDBLite consensus disorder prediction 395 421 - -
Cam06g1977 1878 PANTHER ATP-DEPENDENT CLP PROTEASE 1049 1858 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
Cam06g1977 1878 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1640 1658 IPR001270 GO:0005524(InterPro)
Cam06g1977 1878 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1595 1613 IPR001270 GO:0005524(InterPro)
Cam06g1977 1878 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1669 1687 IPR001270 GO:0005524(InterPro)
Cam06g1977 1878 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1702 1716 IPR001270 GO:0005524(InterPro)
Cam06g1977 1878 SUPERFAMILY DNA-binding pseudobarrel domain 144 276 IPR015300 -
Cam06g1977 1878 CDD B3_DNA 145 247 IPR003340 GO:0003677(InterPro)
Cam06g1977 1878 ProSiteProfiles PB1 domain profile. 725 809 IPR053793 -
Cam06g1977 1878 FunFam Auxin response factor 310 382 - -
Cam06g1977 1878 Coils Coil 1302 1322 - -
Cam06g1977 1878 Gene3D - 721 814 - -
Cam06g1977 1878 MobiDBLite consensus disorder prediction 1 31 - -
Cam06g1977 1878 Pfam AAA domain (Cdc48 subfamily) 1590 1764 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam06g1977 1878 ProSitePatterns Chaperonins clpA/B signature 1. 1343 1355 IPR018368 GO:0005524(InterPro)
Cam06g1977 1878 SMART B3_2 147 249 IPR003340 GO:0003677(InterPro)
Cam06g1977 1878 Gene3D - 1202 1391 IPR027417 -
Cam06g1977 1878 Gene3D - 1543 1769 IPR027417 -
Cam06g1977 1878 Gene3D UVR domain 1457 1521 - -
Cam06g1977 1878 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677(InterPro)
Cam06g1977 1878 MobiDBLite consensus disorder prediction 381 421 - -
Cam06g1977 1878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1208 1490 IPR027417 -
Cam06g1977 1878 Pfam AUX/IAA family 770 813 IPR033389 -
Cam06g1977 1878 FunFam ATP-dependent Clp protease ATP-binding subunit 1392 1476 - -
Cam06g1977 1878 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 1047 1195 - -
Cam06g1977 1878 FunFam ATP-dependent chaperone ClpB 1771 1863 - -
Cam06g1977 1878 CDD AAA 1231 1383 - -
Cam06g1977 1878 Pfam C-terminal, D2-small domain, of ClpB protein 1771 1851 IPR019489 -
Cam06g1977 1878 CDD RecA-like_ClpB_Hsp104-like 1552 1768 - -
Cam06g1977 1878 Gene3D - 1047 1195 IPR036628 -
Cam06g1977 1878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1540 1857 IPR027417 -
Cam06g1977 1878 ProSiteProfiles UVR domain profile. 1465 1500 IPR001943 GO:0005515(InterPro)
Cam06g1977 1878 Pfam Clp amino terminal domain, pathogenicity island component 1062 1114 IPR004176 -
Cam06g1977 1878 Pfam Clp amino terminal domain, pathogenicity island component 1138 1189 IPR004176 -
Cam06g1977 1878 FunFam Auxin response factor 720 814 - -
Cam06g1977 1878 FunFam Auxin response factor 145 249 - -
Cam06g1977 1878 FunFam Chaperone clpB 1, putative 1181 1391 - -
Cam06g1977 1878 Gene3D - 1393 1537 - -
Cam06g1977 1878 ProSiteProfiles Clp repeat (R) domain profile. 1048 1190 IPR004176 -
Cam06g1977 1878 Gene3D - 310 380 - -
Cam06g1977 1878 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677(InterPro)
Cam06g1977 1878 SUPERFAMILY CAD & PB1 domains 728 802 - -
Cam06g1977 1878 SMART ClpB_D2_small_2 1771 1861 IPR019489 -
Cam06g1977 1878 FunFam ATP-dependent Clp protease subunit 1544 1769 - -
Cam06g1977 1878 Gene3D - 144 249 IPR015300 -
Cam06g1977 1878 Pfam Auxin response factor 273 355 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam06g1977 1878 Pfam AAA lid domain 1391 1492 IPR041546 -
Cam06g1977 1878 Pfam ATPase family associated with various cellular activities (AAA) 1253 1365 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2172 Cam-Chr2:34465835 Cam06g1977 Cam-Chr6:30542653 7.20E-136 dispersed
Cam03g0171 Cam-Chr3:2631897 Cam06g1977 Cam-Chr6:30542653 0.00E+00 dispersed
Cam05g0894 Cam-Chr5:8040006 Cam06g1977 Cam-Chr6:30542653 3.40E-14 dispersed
Cam05g1805 Cam-Chr5:26888986 Cam06g1977 Cam-Chr6:30542653 4.50E-203 dispersed
Cam06g1708 Cam-Chr6:28435908 Cam06g1977 Cam-Chr6:30542653 1.20E-160 dispersed
Cam06g1977 Cam-Chr6:30542653 Cam09g2206 Cam-Chr9:36605929 3.30E-202 dispersed
Cam06g1977 Cam-Chr6:30542653 Cam04g1221 Cam-Chr4:26250434 1.60E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52215 PF07724 AAA_2 7.10E-55 CL0023 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g1977 K03696 - csv:101207083 1704.49