Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0060 ATGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCTTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCATATAGGAAGAAGAGGTTGGGGGCTGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTGCTGTAATTAGTAGTATTCAGAACGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACGTAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCTCTGTTGAATCTGGGAAGGATGAAGAGCAAAATGGTTTTAACTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTAATGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATGACGATGATCGATCATCAGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTGCCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAATGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGCAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATCTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTTGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTACATCCTGTTAGTGTCAACCAAAACAAAGGAGCTCATTGGAACGCTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCCGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGACGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATCATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTAATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACAACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCTTTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCACCCCTGAAAGTGGTTCCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCGCGATACAAAGGTCTCGTTGGATCTTGA 3342 42.13 MSFEETELRLGLPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSLPPPKAEVVGWPPIRSYRKKRLGAVQKGSKEEEISDEEKKVVKVRFVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGADWKMSLISQNVAVISSIQNVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKERKKEDEQQKEIKKLENFLFGSLYSSVESGKDEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDDDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGSGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGLVGS 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1741241 1755223 + CaPI482276_07g000600.1 Cam07g0060 130353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0060 1113 Gene3D Magnesium transport protein CorA, transmembrane region 828 1043 - -
Cam07g0060 1113 Gene3D - 385 699 IPR015943 GO:0005515(InterPro)
Cam07g0060 1113 FunFam Magnesium transporter MRS2-1 740 824 - -
Cam07g0060 1113 Pfam AUX/IAA family 5 144 IPR033389 -
Cam07g0060 1113 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 533 568 - -
Cam07g0060 1113 MobiDBLite consensus disorder prediction 188 207 - -
Cam07g0060 1113 Coils Coil 188 216 - -
Cam07g0060 1113 MobiDBLite consensus disorder prediction 170 207 - -
Cam07g0060 1113 SUPERFAMILY WD40 repeat-like 406 697 IPR036322 GO:0005515(InterPro)
Cam07g0060 1113 MobiDBLite consensus disorder prediction 170 187 - -
Cam07g0060 1113 FunFam U3 small nucleolar RNA-associated protein 18 homolog 386 700 - -
Cam07g0060 1113 Pfam Magnesium transporter MRS2-like 765 1040 - -
Cam07g0060 1113 ProSiteProfiles Trp-Asp (WD) repeats profile. 533 574 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 Pfam WD domain, G-beta repeat 530 565 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 Pfam WD domain, G-beta repeat 408 434 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 Pfam WD domain, G-beta repeat 584 608 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 SMART WD40_4 395 435 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 SMART WD40_4 527 565 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 SMART WD40_4 568 608 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 Coils Coil 916 943 - -
Cam07g0060 1113 PANTHER WD-REPEAT PROTEIN-RELATED 190 697 IPR045161 GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034388(PANTHER)
Cam07g0060 1113 MobiDBLite consensus disorder prediction 841 864 - -
Cam07g0060 1113 CDD Mrs2_Mfm1p-like 753 1110 IPR039204 -
Cam07g0060 1113 Gene3D - 735 824 - -
Cam07g0060 1113 MobiDBLite consensus disorder prediction 328 353 - -
Cam07g0060 1113 Gene3D - 96 183 - -
Cam07g0060 1113 MobiDBLite consensus disorder prediction 1 25 - -
Cam07g0060 1113 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 1049 1100 IPR045863 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0060 Cam-Chr7:1741241 Cam09g0731 Cam-Chr9:7386676 1.70E-20 dispersed
Cam11g1524 Cam-Chr11:28069286 Cam07g0060 Cam-Chr7:1741241 7.30E-07 dispersed
Cam02g0026 Cam-Chr2:1404830 Cam07g0060 Cam-Chr7:1741241 1.10E-84 transposed
Cam02g0728 Cam-Chr2:8800409 Cam07g0060 Cam-Chr7:1741241 5.80E-74 transposed
Cam05g1114 Cam-Chr5:10262101 Cam07g0060 Cam-Chr7:1741241 1.70E-85 transposed
Cam06g0667 Cam-Chr6:8992920 Cam07g0060 Cam-Chr7:1741241 6.40E-145 transposed
Cam08g1494 Cam-Chr8:21177464 Cam07g0060 Cam-Chr7:1741241 1.40E-67 transposed
Cam10g1389 Cam-Chr10:27538192 Cam07g0060 Cam-Chr7:1741241 3.90E-85 transposed
Cam02g1722 Cam-Chr2:30299488 Cam07g0060 Cam-Chr7:1741241 6.40E-12 wgd
Cam05g0534 Cam-Chr5:4697133 Cam07g0060 Cam-Chr7:1741241 1.10E-17 wgd
Cam06g0663 Cam-Chr6:8924537 Cam07g0060 Cam-Chr7:1741241 1.60E-16 wgd
Cam07g0060 Cam-Chr7:1741241 Cam09g0730 Cam-Chr9:7353739 1.10E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52220 PF02309 AUX_IAA 1.20E-28 CL0072 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0060 K14553 - csv:101208908 922.154