Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0060 ATGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCTTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCATATAGGAAGAAGAGGTTGGGGGCTGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTGCTGTAATTAGTAGTATTCAGAACGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACGTAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCTCTGTTGAATCTGGGAAGGATGAAGAGCAAAATGGTTTTAACTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTAATGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATGACGATGATCGATCATCAGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTGCCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAATGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGCAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATCTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTTGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTACATCCTGTTAGTGTCAACCAAAACAAAGGAGCTCATTGGAACGCTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCCGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGACGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATCATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTAATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACAACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCTTTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCACCCCTGAAAGTGGTTCCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCGCGATACAAAGGTCTCGTTGGATCTTGA 3342 42.13 MSFEETELRLGLPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSLPPPKAEVVGWPPIRSYRKKRLGAVQKGSKEEEISDEEKKVVKVRFVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGADWKMSLISQNVAVISSIQNVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKERKKEDEQQKEIKKLENFLFGSLYSSVESGKDEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDDDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGSGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGLVGS 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1741241 1755223 + CaPI482276_07g000600.1 Cam07g0060 130353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0060 1113 Gene3D Magnesium transport protein CorA, transmembrane region 828 1043 - -
Cam07g0060 1113 Gene3D - 385 699 IPR015943 GO:0005515(InterPro)
Cam07g0060 1113 FunFam Magnesium transporter MRS2-1 740 824 - -
Cam07g0060 1113 Pfam AUX/IAA family 5 144 IPR033389 -
Cam07g0060 1113 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 533 568 - -
Cam07g0060 1113 MobiDBLite consensus disorder prediction 188 207 - -
Cam07g0060 1113 Coils Coil 188 216 - -
Cam07g0060 1113 MobiDBLite consensus disorder prediction 170 207 - -
Cam07g0060 1113 SUPERFAMILY WD40 repeat-like 406 697 IPR036322 GO:0005515(InterPro)
Cam07g0060 1113 MobiDBLite consensus disorder prediction 170 187 - -
Cam07g0060 1113 FunFam U3 small nucleolar RNA-associated protein 18 homolog 386 700 - -
Cam07g0060 1113 Pfam Magnesium transporter MRS2-like 765 1040 - -
Cam07g0060 1113 ProSiteProfiles Trp-Asp (WD) repeats profile. 533 574 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 Pfam WD domain, G-beta repeat 530 565 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 Pfam WD domain, G-beta repeat 408 434 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 Pfam WD domain, G-beta repeat 584 608 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 SMART WD40_4 395 435 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 SMART WD40_4 527 565 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 SMART WD40_4 568 608 IPR001680 GO:0005515(InterPro)
Cam07g0060 1113 Coils Coil 916 943 - -
Cam07g0060 1113 PANTHER WD-REPEAT PROTEIN-RELATED 190 697 IPR045161 GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034388(PANTHER)
Cam07g0060 1113 MobiDBLite consensus disorder prediction 841 864 - -
Cam07g0060 1113 CDD Mrs2_Mfm1p-like 753 1110 IPR039204 -
Cam07g0060 1113 Gene3D - 735 824 - -
Cam07g0060 1113 MobiDBLite consensus disorder prediction 328 353 - -
Cam07g0060 1113 Gene3D - 96 183 - -
Cam07g0060 1113 MobiDBLite consensus disorder prediction 1 25 - -
Cam07g0060 1113 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 1049 1100 IPR045863 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0060 K14553 - - csv:101208908 922.154
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0060 Cam-Chr7:1741241 Cam09g0731 Cam-Chr9:7386676 1.70E-20 dispersed
Cam11g1524 Cam-Chr11:28069286 Cam07g0060 Cam-Chr7:1741241 7.30E-07 dispersed
Cam02g0026 Cam-Chr2:1404830 Cam07g0060 Cam-Chr7:1741241 1.10E-84 transposed
Cam02g0728 Cam-Chr2:8800409 Cam07g0060 Cam-Chr7:1741241 5.80E-74 transposed
Cam05g1114 Cam-Chr5:10262101 Cam07g0060 Cam-Chr7:1741241 1.70E-85 transposed
Cam06g0667 Cam-Chr6:8992920 Cam07g0060 Cam-Chr7:1741241 6.40E-145 transposed
Cam08g1494 Cam-Chr8:21177464 Cam07g0060 Cam-Chr7:1741241 1.40E-67 transposed
Cam10g1389 Cam-Chr10:27538192 Cam07g0060 Cam-Chr7:1741241 3.90E-85 transposed
Cam02g1722 Cam-Chr2:30299488 Cam07g0060 Cam-Chr7:1741241 6.40E-12 wgd
Cam05g0534 Cam-Chr5:4697133 Cam07g0060 Cam-Chr7:1741241 1.10E-17 wgd
Cam06g0663 Cam-Chr6:8924537 Cam07g0060 Cam-Chr7:1741241 1.60E-16 wgd
Cam07g0060 Cam-Chr7:1741241 Cam09g0730 Cam-Chr9:7353739 1.10E-14 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g1389 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cam08g1494 . 6 380 MRS2 Gene Family AT1G16010 52.4 3.6e-107 385.6
Cam06g0667 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cam07g0060 . 715 1086 MRS2 Gene Family AT5G64560 68.9 1.4e-131 466.5
Cam02g0728 . 14 495 MRS2 Gene Family AT3G19640 64.4 2.3e-155 545.8
Cam05g1114 . 59 442 MRS2 Gene Family AT3G58970 70.6 3.4e-142 501.9
Cam02g0026 . 59 442 MRS2 Gene Family AT3G58970 69.7 3.2e-140 495.4
Cam08g1494 . 6 380 MRS2 Gene Family AT2G03620 68.1 2.1e-136 482.6
Cam10g1389 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cam05g1114 . 59 441 MRS2 Gene Family AT4G28580 50.1 2.3e-92 336.3
Cam06g0667 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cam07g0060 . 715 1048 MRS2 Gene Family AT5G09690 63.9 1.8e-108 389.4
Cam10g1389 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Cam06g0667 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cam07g0060 . 750 1008 MRS2 Gene Family AT5G09720 61.7 4.9e-76 281.6
Cam10g1389 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Cam08g1494 . 6 380 MRS2 Gene Family AT1G80900 54.2 6.8e-106 381.3
Cam01g1344 . 41 436 MRS2 Gene Family AT5G22830 71.5 3.0e-149 525.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002983 1 10 1 1 1 1 2 2 2 1 2 2 2 1 0 2 2 2 2 2 1 1 0 2 0 2 1 1 1 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52220 PF02309 AUX_IAA 1.20E-28 CL0072 Cam TR