Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0090 ATGGCTTCTTCTTCTTCCTCTTCCTCTGCAAATACTAGTGTGTCAGGCAGTGGCGGTGGCAGTGGCTCGCCTTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATTTTTGCTCCTTACTTTTGCTCAGAGCAAGGGGCTGCAAGATTTGCTGCCATTCATAAAGTGTTTGGTGCAAGTAATGTTTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCATGATCCTGTTTATGGATGTGTTGCTCATATTTTTGCGCTCCAACAACAGGTGGCATATTTACAAACACAGCTAATGCAAGCCAAGGCTCAACTTGCACAAACCCTGATGGATTCAGGAGGTAATATGGAGATTCAATGGACAGGCAATTTCAATAACAATCTCTTCAATGGAATTCCAAATAATTATCAAACTCAGATTATGAACAACCCAGCAGTTTCCCCTCGGAGTTCTTTAGAATCAGCTGCCAACAATGATGAAGCTTTATTATTCATAAATAATCAAAATCACCTTCATGAAAGCCAAAGCAGATCACCAGAAGAATCTCAATTTCTTCAACCATTTCCTATTAAAAAATTGCCTTCTTCTCATGCTGATCTTGGGGAACTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA 702 40.46 MASSSSSSSANTSVSGSGGGSGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLMDSGGNMEIQWTGNFNNNLFNGIPNNYQTQIMNNPAVSPRSSLESAANNDEALLFINNQNHLHESQSRSPEESQFLQPFPIKKLPSSHADLGELQALALRMMRN 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2055102 2056490 + CaPI482276_07g000900.1 Cam07g0090 130383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0090 233 Pfam Lateral organ boundaries (LOB) domain 24 122 IPR004883 -
Cam07g0090 233 ProSiteProfiles LOB domain profile. 23 125 IPR004883 -
Cam07g0090 233 MobiDBLite consensus disorder prediction 1 20 - -
Cam07g0090 233 MobiDBLite consensus disorder prediction 1 22 - -
Cam07g0090 233 PANTHER LOB DOMAIN CONTAINING PROTEIN 20 195 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0194 Cam-Chr6:3766241 Cam07g0090 Cam-Chr7:2055102 7.50E-43 dispersed
Cam07g0090 Cam-Chr7:2055102 Cam09g0786 Cam-Chr9:7981934 1.40E-38 dispersed
Cam07g0090 Cam-Chr7:2055102 Cam07g0091 Cam-Chr7:2064796 2.00E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52225 PF03195 LOB 2.60E-36 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0090 K13944 - csv:101214521 365.54