Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0165 ATGGTGGTCTCTCTTACACTACAGTTTTCCACCGCTTCTTCAATCCCTTTCCTTCTTCTTCTCATCATCTTCTTCGTTCAATCCAGTTTTGCTCGAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCAATGGCGGACCGGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGCAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATTGATGATTGTTGGCGTTGTGACCCACGTTGGCAATTGCGGCGAAAGCATCTGGCCAACTGTGGCATTGGGTTCGGACGTAATGCGGTTGGTGGCCGTGATGGGCGATACTACGTCGTCTCCAATCCTGGTGACGACGATCCTGTCAATCCCCGACCAGGGACCCTTCGTCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTATTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGTGCTAATGTCCATATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTCATTATTCATGGTTTGCATATTCACGACTGCAAGCGGACGGGAAACGCCATGGTTCGAAGCTCGCCGAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGTATTTCCATTTTTGGGTCAAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTTCTGATGGACTCATTGATGCTATCATGGGATCAACTGCCATCACTATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCACTGGGAAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGCGAATCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGAAACAAATAACGGTGTATGGAGGCACTGGAATTGGAGATCAGAAGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCATCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGCACCATTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAA 1308 44.88 MVVSLTLQFSTASSIPFLLLLIIFFVQSSFARDERLQSFNSSSMADRYIKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSNPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKRTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVETNNGVWRHWNWRSEGDLMLNGAYFTPSGAGAASSYARASSLGAKSSSLVGTITSNAGALSCRRGFRC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2858740 2864246 - CaPI482276_07g001650.1 Cam07g0165 130458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0165 435 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cam07g0165 435 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cam07g0165 435 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cam07g0165 435 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cam07g0165 435 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Cam07g0165 435 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cam07g0165 435 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cam07g0165 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Cam07g0165 435 Gene3D - 86 428 IPR012334 -
Cam07g0165 435 Pfam Pectate lyase 169 350 IPR002022 -
Cam07g0165 435 FunFam Pectate lyase 86 428 - -
Cam07g0165 435 SUPERFAMILY Pectin lyase-like 64 430 IPR011050 -
Cam07g0165 435 PANTHER PECTATE LYASE 18-RELATED 26 432 IPR045032 GO:0030570(InterPro)
Cam07g0165 435 SMART amb_all 161 358 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0165 Cam-Chr7:2858740 Cam09g1998 Cam-Chr9:34622976 9.10E-172 dispersed
Cam05g0405 Cam-Chr5:3733631 Cam07g0165 Cam-Chr7:2858740 1.40E-204 wgd
Cam06g0790 Cam-Chr6:10686862 Cam07g0165 Cam-Chr7:2858740 2.20E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0165 K01728 - csv:101207204 831.632