Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0188 ATGGGCGGCCGCACGTTGTTCACTTTGGCTGAGGTTGCCTCCCATGACAATCGCAACGACTGCTGGTTGATCATCGAAGACAAGGTGTATGATGTAACAAAATTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGGCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGACGTCGGGCACAGTAGTGCTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACTATTCCTGTGAAAAGGAAGTACACTCCTCCAAAGCAGCCACTATACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTTGCTCCCCTGGTAATTTTGGGCTTGGCTTTTGGCATCCACCTCTATACCAAAACAACTTAA 402 46.27 MGGRTLFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLAGVGKDATNDFFDVGHSSAARAMMEEFYVGDIDSSTIPVKRKYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILGLAFGIHLYTKTT 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3080137 3082181 - CaPI482276_07g001880.1 Cam07g0188 130481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0188 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Cam07g0188 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Cam07g0188 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Cam07g0188 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Cam07g0188 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Cam07g0188 133 PANTHER CYTOCHROME B5 6 126 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cam07g0188 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 91 IPR036400 -
Cam07g0188 133 FunFam Cytochrome b5 type B 2 84 - -
Cam07g0188 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037(InterPro)
Cam07g0188 133 SMART Cyt_b5_2 7 80 IPR001199 -
Cam07g0188 133 Gene3D - 3 85 IPR036400 -
Cam07g0188 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0188 K23490 - - csv:101212882 260.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0188 Cam-Chr7:3080137 Cam08g1498 Cam-Chr8:21197386 3.70E-23 dispersed
Cam11g0220 Cam-Chr11:3728512 Cam07g0188 Cam-Chr7:3080137 1.10E-15 transposed
Cam05g0384 Cam-Chr5:3533029 Cam07g0188 Cam-Chr7:3080137 4.60E-50 wgd
Cam06g0799 Cam-Chr6:10986942 Cam07g0188 Cam-Chr7:3080137 3.30E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g0022 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.2e-59 224.6
Cam05g0384 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Cam06g0799 . 1 133 NADPH P450 reductases AT5G53560 64.7 7.4e-48 186.8
Cam07g0188 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cam05g0384 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Cam06g0799 . 1 133 NADPH P450 reductases AT5G48810 60.7 1.5e-46 182.6
Cam07g0188 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cam01g0022 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.2e-45 177.2
Cam05g0384 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Cam06g0799 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.3e-47 183.7
Cam07g0188 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Cam01g0022 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.0e-40 162.2
Cam08g1498 . 1 130 NADPH P450 reductases AT1G26340 55.6 1.2e-37 152.9
Cam04g0503 . 2 281 NADPH P450 reductases AT5G17770 81.8 3.9e-131 464.5
Cam10g1638 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cam02g2493 . 287 559 NADPH P450 reductases AT5G17770 73.3 7.1e-117 417.2
Cam02g2496 . 56 191 NADPH P450 reductases AT5G17770 75.7 1.1e-53 207.2
Cam02g2500 . 303 437 NADPH P450 reductases AT5G17770 75.6 4.2e-53 205.3
Cam01g0022 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.2e-59 224.6
Cam05g0384 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Cam06g0799 . 1 133 NADPH P450 reductases AT5G53560 64.7 7.4e-48 186.8
Cam07g0188 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cam05g0384 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Cam06g0799 . 1 133 NADPH P450 reductases AT5G48810 60.7 1.5e-46 182.6
Cam07g0188 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cam01g0022 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.2e-45 177.2
Cam05g0384 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Cam06g0799 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.3e-47 183.7
Cam07g0188 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Cam01g0022 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.0e-40 162.2
Cam08g1498 . 1 130 NADPH P450 reductases AT1G26340 55.6 1.2e-37 152.9
Cam04g0503 . 2 281 NADPH P450 reductases AT5G17770 81.8 3.9e-131 464.5
Cam10g1638 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cam02g2493 . 287 559 NADPH P450 reductases AT5G17770 73.3 7.1e-117 417.2
Cam02g2496 . 56 191 NADPH P450 reductases AT5G17770 75.7 1.1e-53 207.2
Cam02g2500 . 303 437 NADPH P450 reductases AT5G17770 75.6 4.2e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156