Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0249 ATGAGCAGCGTTTGTGCGGAGCAACAGAAATTTCAATTTCAATTTCAATTTCCGTCTTCTGCTTCTGCTGCTTCTTCTTCGTGTTCTTCGTGGTTTCTTAAGGATATTAACGTTCCGCCGAGGAAGCTTGTCGCTGCGGTGAGACGAGAAAACGGTGAAATGTGTTCTGATTCGCCGCGGTTTTCGTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTTAATGGCGAGGATGAAGCGGAGGAGGATGGAGATCCGTATTCGTCAGACCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCAGGAGAGAAGGCACGGAGGCGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGAGTTTCGTCGCGGCGGTTGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAATGTTGGCTTCATCCCGCGAGGTATCGTACTGAAGCTTGTAAAGATGGAAAAAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCTCCTGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCACCGAATAAGAGAAATTCTGGTCTTAGATCGGCCACTTCCGGTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCACTTCCTCACCGACTTCAACGCTTTTCGGGATGTCTCATCTGTCTCCGCCACACTCTCCGCCGCTCTCGCCGGGAAAACCTCGGTCATCGATTAATGGATTTTCACCGATTTCGAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACTGAGCTGATGAGCTCAATTGAATCCATGAATATCGACGACGCCAATGCCACTTTAGCCGCCGCCGCCGCCGCCGCCGCCACTCCAAGACAGACGATTCCTTGGATCGATGTTTCATCTCTCAACTCTGAAGATCAACTGCAGTTTGTTCTCTCACCTTCTACTCCAAACGTGTCCGTCGAGAACAAAGGTAACCCCGACAATGGATGGGCCTCCTCCTCCGATCCGGATCTTGGATGGGTTAATGATCTGCTGATGTAA 1143 48.73 MSSVCAEQQKFQFQFQFPSSASAASSSCSSWFLKDINVPPRKLVAAVRRENGEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRNSGLRSATSGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKPRSSINGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAAAAAAATPRQTIPWIDVSSLNSEDQLQFVLSPSTPNVSVENKGNPDNGWASSSDPDLGWVNDLLM 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3611851 3612993 + CaPI482276_07g002490.1 Cam07g0249 130542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0249 380 MobiDBLite consensus disorder prediction 262 277 - -
Cam07g0249 380 PANTHER UNKEMPT FAMILY MEMBER 59 325 IPR045234 -
Cam07g0249 380 FunFam Zinc finger CCCH domain-containing protein 66 90 158 - -
Cam07g0249 380 MobiDBLite consensus disorder prediction 348 366 - -
Cam07g0249 380 ProSiteProfiles Zinc finger C3H1-type profile. 133 159 IPR000571 GO:0046872(InterPro)
Cam07g0249 380 Gene3D - 132 195 - -
Cam07g0249 380 SMART c3hfinal6 132 158 IPR000571 GO:0046872(InterPro)
Cam07g0249 380 SMART c3hfinal6 167 190 IPR000571 GO:0046872(InterPro)
Cam07g0249 380 MobiDBLite consensus disorder prediction 348 369 - -
Cam07g0249 380 MobiDBLite consensus disorder prediction 247 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0249 Cam-Chr7:3611851 Cam11g0200 Cam-Chr11:3522594 3.80E-57 dispersed
Cam07g0249 Cam-Chr7:3611851 Cam05g1935 Cam-Chr5:28293110 2.60E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52241 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0249 K23047 - csv:101211149 603.208