Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0331 ATGGCCGCCCTTCCTCTTACTCTTCTCCCCATTCTCCTTTCGCTTCTTGCCGTCGACGCTAGGATCCCTGGAGTTTACTCCGGCGGCCAGTGGCAGAGTGCTCATGCTACTTTTTATGGCGGCAGTGACGCCTCCGGAACCATGGGAGGTGCTTGCGGTTACGGAAACTTATACAGCCAAGGCTACGGCGTAAACACGGCGGCGTTGAGTACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCCTGCTTCGAGCTTAAGTGCGCTAACGATCCACAGTGGTGCCATTCCGGCAGTCCGTCGATTTTCATCACTGCCACGAACTTTTGCCCTCCGAACTACGCTCTTCCAAGCGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCTGAGTACAGAGCCGGAATCGTTCCCGTCTCTTATCGCAGGGTGCCATGCCGCAAGCAAGGAGGAATAAGATTCACAATCAACGGTTTCCGCTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGGGACATCGTGAAGGCCAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGGTTGGTCAGTCACTTTCCTTTAGGGTCACAGCCAGTGACCGTCGCACCTCCACTTCCTGGAACATCGTCCCTTCCAATTGGCAATTTGGCCAGACTTTCACCGGCAAGAATTTCAGGGTCTAA 774 54.39 MAALPLTLLPILLSLLAVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4460313 4462346 - CaPI482276_07g003310.1 Cam07g0331 130624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0331 257 PANTHER EXPANSIN-A15 18 255 IPR002963 GO:0009664(InterPro)
Cam07g0331 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Cam07g0331 257 Gene3D - 163 255 IPR036749 -
Cam07g0331 257 FunFam Expansin 163 255 - -
Cam07g0331 257 FunFam Expansin 20 159 - -
Cam07g0331 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Cam07g0331 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Cam07g0331 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Cam07g0331 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Cam07g0331 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Cam07g0331 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Cam07g0331 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Cam07g0331 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Cam07g0331 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Cam07g0331 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Cam07g0331 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Cam07g0331 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Cam07g0331 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Cam07g0331 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Cam07g0331 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Cam07g0331 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Cam07g0331 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Cam07g0331 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Cam07g0331 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Cam07g0331 257 Gene3D - 19 159 IPR036908 -
Cam07g0331 257 SMART dpbb_1 66 153 IPR007112 -
Cam07g0331 257 CDD DPBB_EXPA_N 30 158 - -
Cam07g0331 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0330 Cam-Chr1:3691324 Cam07g0331 Cam-Chr7:4460313 3.10E-74 dispersed
Cam04g0911 Cam-Chr4:23247577 Cam07g0331 Cam-Chr7:4460313 4.80E-136 dispersed
Cam04g0974 Cam-Chr4:23848837 Cam07g0331 Cam-Chr7:4460313 4.00E-91 dispersed
Cam07g0331 Cam-Chr7:4460313 Cam07g0517 Cam-Chr7:7464474 8.20E-104 dispersed
Cam02g2077 Cam-Chr2:33675434 Cam07g0331 Cam-Chr7:4460313 2.40E-135 wgd
Cam03g0142 Cam-Chr3:2342561 Cam07g0331 Cam-Chr7:4460313 4.50E-134 wgd
Cam07g0331 Cam-Chr7:4460313 Cam09g2011 Cam-Chr9:34743180 1.30E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0331 - - - 0.0