Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0344 ATGACAGGCCTTAACTCTTCTAATTTCTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTACGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTACATCTCCCCATTCATATCCGAAGCCACGCTGCCCTTACGGTCGCTTATGAAGCGCTCGAGCGCATGCGAGATCCTACCTATGGTTGCGTTGCGCATATTTTCGCATTGCAGCAAGAGGTTGCGAGCTTGCAAGAGGAGATAGAAATTCTGGGGAGCCAAATAGCAAACTTCACTGCTACCGGTGGGAGCGTTGCGGGGGTTGAGAATCCATTTATAGATCAGCTTCAAGTTTCACAACAGCTGAAAGATTTTGGGATGATGAACAGAGATGATTATCAAAATGAGCTGCTTTCTGAGTTGCCCTATCAAAGTTTTGATAACATCCAAAATGATAATAATGGTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGGGTTTTGCAGCTCAAATGATGTTGTTGAGAGATCAGCCTGTGATGTTTCATTTGAGGAGAGTTTTGTTGGTTATCCATGGGTAGTTGGATGA 663 42.68 MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTATGGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQNELLSELPYQSFDNIQNDNNGQMISPLFCLGEEDGVFGFCSSNDVVERSACDVSFEESFVGYPWVVG 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4628000 4628938 + CaPI482276_07g003440.1 Cam07g0344 130637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0344 220 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Cam07g0344 220 Coils Coil 93 120 - -
Cam07g0344 220 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 132 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cam07g0344 220 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0344 Cam-Chr7:4628000 Cam09g0786 Cam-Chr9:7981934 2.50E-32 dispersed
Cam07g0344 Cam-Chr7:4628000 Cam05g0253 Cam-Chr5:2483260 5.30E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52249 PF03195 LOB 8.90E-33 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0344 K13945 - csv:101204875 375.941