Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0407 ATGGAGGGGAAGGAGGAAGATGTCCGACTGGGAGCCAACAAGTTCAACGAGAGGCAGCCCATTGGGACGGCGGCGCAGAGCCAGGACGACGCCAAGGACTACAAGGAGCCACCACCGGCGCCTCTGTTCGAGCCAGACGAGCTCACTTCATGGTCCTTTTACAGAGCTGGAATCGCAGAGTTTTTCGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGGGTCGTCCGGTCCAACGAAGCCAACGGCAACACCTGTAAGACCGTCGGGATTCAGGGGATTGCTTGGGCTTTCGGGGGTATGATTTTTGCTCTGGTTTACTGTACTGCTGGAATCTCCGGTGGCCACATTAACCCGGCAGTGACTTTTGGGCTGTTTCTGGCGAGAAAGCTGTCGTTGACCAGGGCGATTTTCTACATAGTGATGCAGTGCCTTGGTGCTATCTGCGGAGCCGGCGTGGTGAAGGGATTCCAACCCAAGCCCTACGAAAGGCTCGGCGGTGGAGCGAATGTTGTGAACAGTGGATACACCAAAGGAGATGGGCTGGGCGCCGAGATCGTGGGTACTTTCATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCCAAACGCAGCGCCAGAGACTCGCATGTTCCGATTTTGGCACCACTACCAATTGGGTTTGCAGTGTTCTTAGTCCACTTGGCCACCATTCCGATCACCGGCACGGGCATTAACCCAGCCAGGAGTTTGGGAGCAGCCATCATCTTCAACCAGGACAAAGCATGGGACGATCACTGGATATTCTGGGTTGGACCGTTCATCGGAGCAGCATTGGCAGCTTTATACCATCAAGTGGTGATTAGAGCCATTCCCTTCAAGTCCAAATGA 879 54.61 MEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYKEPPPAPLFEPDELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYERLGGGANVVNSGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNQDKAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5409974 5411019 - CaPI482276_07g004070.1 Cam07g0407 130700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0407 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Cam07g0407 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g0407 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g0407 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g0407 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g0407 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g0407 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g0407 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g0407 292 CDD MIP 55 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g0407 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 291 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cam07g0407 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Cam07g0407 292 FunFam Probable aquaporin PIP1-2 40 292 - -
Cam07g0407 292 SUPERFAMILY Aquaporin-like 47 285 IPR023271 -
Cam07g0407 292 MobiDBLite consensus disorder prediction 1 39 - -
Cam07g0407 292 NCBIfam MIP family channel protein 59 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0405 Cam-Chr7:5396100 Cam07g0407 Cam-Chr7:5409974 1.90E-165 dispersed
Cam07g0407 Cam-Chr7:5409974 Cam10g2153 Cam-Chr10:35051659 7.10E-128 dispersed
Cam07g0406 Cam-Chr7:5402798 Cam07g0407 Cam-Chr7:5409974 4.80E-169 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0407 K09872 - csv:101215145 579.711