Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0410 ATGGTAGGCGTCTTTGGTAATCTGTCATCCATGTCGTCAATTGTTGATATGCTACCAGTCGATCGATTTTCTGGCAGGCCGAGCCCATTACATTCACCCATTGTCGTCGTTGGCCAGCGGAGGTCCAAAGCAGCACCGACCGATCATGGTGTGAGATGTGTTGCTTGCGACAGCTACGTCTACTCAACGAACGATAATCAATTTCAATCCAATGCCTTGATTTTTTACTACCACCGCCAACGGCAAATGGCTTCCGTATATCGTGATCGGACGTCGGAATTTCGGTCACTGTCGGAGACGCTGAAGAAGATCGGTGGAGCCACAGCTGCCGTCAATCCAGCTCAAAATGAACCATCGGCGTCCACGCCCTCCGGATCACCGGCCTTTGCACGATCAGAATTCAGCAAAAAGGCCTCGCGCATCGGATTGGGTATCCAAGAAACCTCTCAGAAGATCGTGAGGCTCGCTCAGTTGGCGAAAAGATCATCAATGTTTGATGACCCAATGAGGGAAATACAGGAAATGACTGCTTTGATTAAAAATGATATTACATCCTTGAATGTAGCGATCACAGACTTGCAAACCATCCATAACATGGAGACAACAGAGGGGAATTATTCAGAGGATAGAGTGGTTCATTCAACAGCTGTCTGTGATGACTTGAAGAGCAGACTTATGGGAGCTACAAAACAGCTTCAAGATGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGGCAAATATTTTCTGCAAATGCATCCAGAGAAAGTCCTTTCCAGAATCAACCCAAAACTGTAACACAACCTCCACCTTGGTCAAGTAATACATCTGGAAGTGCCCAATCACCCTTGTTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACATGAACACCCCATCACAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTGCAGTTGCGCTCCATAATGTGGAATCCACCATATCAGAACTCAGTGGAATTTTTACACATCTTGCCACTATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGATGAATCGTTGGCAAACGTAGATGGTGCTCGGAGTGCTCTTTTAAGGCATCTTAACCAGATATCATCAAACAGATGGCTTCTTATAAAAATATTTGCCATTTTAATAATTTTCTTGATGGTCTTTATATTCTTGGCGTGA 1263 44.89 MVGVFGNLSSMSSIVDMLPVDRFSGRPSPLHSPIVVVGQRRSKAAPTDHGVRCVACDSYVYSTNDNQFQSNALIFYYHRQRQMASVYRDRTSEFRSLSETLKKIGGATAAVNPAQNEPSASTPSGSPAFARSEFSKKASRIGLGIQETSQKIVRLAQLAKRSSMFDDPMREIQEMTALIKNDITSLNVAITDLQTIHNMETTEGNYSEDRVVHSTAVCDDLKSRLMGATKQLQDVLTTRTENIKANESRRQIFSANASRESPFQNQPKTVTQPPPWSSNTSGSAQSPLLSSNGAQVGGQLRRRLAVENMNTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVDGARSALLRHLNQISSNRWLLIKIFAILIIFLMVFIFLA 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5438241 5442877 + CaPI482276_07g004100.1 Cam07g0410 130703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0410 420 CDD SNARE_syntaxin5 332 417 - -
Cam07g0410 420 ProSitePatterns Syntaxin / epimorphin family signature. 335 374 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cam07g0410 420 Gene3D - 130 384 - -
Cam07g0410 420 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 88 103 IPR021538 -
Cam07g0410 420 MobiDBLite consensus disorder prediction 108 130 - -
Cam07g0410 420 SMART tSNARE_6 324 391 IPR000727 -
Cam07g0410 420 MobiDBLite consensus disorder prediction 112 129 - -
Cam07g0410 420 SUPERFAMILY t-snare proteins 131 384 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cam07g0410 420 MobiDBLite consensus disorder prediction 255 297 - -
Cam07g0410 420 Pfam SNARE domain 366 417 IPR000727 -
Cam07g0410 420 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 329 391 IPR000727 -
Cam07g0410 420 PANTHER SYNTAXIN 141 411 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0410 Cam-Chr7:5438241 Cam08g1742 Cam-Chr8:23691801 2.50E-65 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0410 K08490 - csv:101213786 587.03