Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0436 ATGACTGATCCACAACACTCACGACGCCATCTCAATTTCACCCTCCAATCGAGGCCTTCTCGATTTCTCTCTGTTGGCTACCAGTTTCTTCAATCATTGAACCTCTTTCTTCTTTCAATTTACTTACAGGAACTGGATATGTGCAGTGGCTCTAAGAATAAAGTTGCTTCCTCGAATTCCGCCATGGAAGCTAGGTTTCTGAAGCTTAGCGAGGGGGCTTTGTTCTCCGCGAATTCAATCTTGCTTGAACTATCAGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGATTTGGATGTTGATGAGCCAAGCTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCATTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGTACTTAATTGAGACGGGCAAAGTTGATGTCAACAGGGCTTGTGGTTCAGATTTGACCACTGCCCTTCACTGTGCCACTGCTGGTGGCTCTTGTTCTTCCCTTGAGACCATCAAGCTCTTGCTAGATGGATCTGCTGACGTCGATTGTGTCGATGCCTATGGGAGAAAACCTGTCGATTTGATTGTTTCAGCTTGCAGGATTGTGCTCAATTCGGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGGTGATCTGAGTCTTTACCTTGAAGAAGACCAGCAGAAGATCACAGCCTCCCAATCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCAGTTGATGTATCGCTGCCCGACATCAACAGCGGGATATACGGTACCGATGATTTCAGGATGTATACATTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCACACGATTGGACCGAGTGCCCTTTTGTTCATCCTGGCGAGAACGCTAGGCGTAGAGACCCCAGGAAGTACCCGTATAGTTGCGTCCCGTGCCCTGAATTCCGGAAGGGGGCTTGCCCAAAGGGAGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGTAAGGATGAGACTGGCTGCACAAGAAAAGTCTGCTTCTTTGCTCACAAACCTGATGAGTTGCGCCCTGTGTATGCATCAACAGGCTCAGGCATGCCCTCACCTAGGTCTCTTTCGAGCAGTGCCGCAGATATGTCTACCATGAGCCCGCTTGCTCTTGGTTCATCATCGTTGTCCTTGCCGACTACCTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCGAAAAATGGGAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAGCTCCCTGGTAGCCGGTTAAAGGCCACCTTGAGCGCAAGAGATTTGGATTTGGAGATGGAATTGCTCGGGTTAGAAAAGAACGCGAGCCAATTACAACATCAACAACAGTTGATCGACGAGATAGCCCGGCTCTCCTCTCCTTCTTACTGGAGTGCAGATGTAAGCAGGAGTGCAGAGTTGAAGCCAGCAAACCTCGATGACATGTTTGGATCATTAGATTCTTCCTTATTGTCTCAGTTGCAAGGCACCTCGCTAAAGACGCCAATCTCAGCTCAAGTTCAATCTCCAACTGGGCTGCAGATGCGCCAAAACATCAACCAACTCCGTGCAAGTTACCCAGCTAACCTATCTTCCTCACCTGTAAAGAAACCCACTTCTTTTGGCTTTGACTCATCAAGTGCAGTGGCAGCTGCAGTTATGAACTCAAGGTCTGCTGCCTTTGCTAAACGAAGCCAGAGTTTCATCGATCGAGCTGCAGTGACTCGTCTTCCTGGGTTTACCGGAGCTGCAAATTCTGCAGCTACAATGTCTTCCCATCTCTCTGATTGGAACTCGCCTGATGGAAAACTAGACTGGGGAGTGCATGGCAACGATCTCAACAAACTCAAGAAATCTGCTTCGTTTGGGATCCGAAACAACGGCATCGGAACTCCCACATTTGCTCCACCAGTAGAGGAGCCTGATGTCTCTTGGGTCAACTCCTTGGTCAAAGACGTTCCATCGGAAAGCTTCGGGCTGTTCGGTGCCGAGAAGCGTCCATACAGCCTCAAAAGAGAAATCAACGAGATGCTCCCGTCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2199 48.75 MTDPQHSRRHLNFTLQSRPSRFLSVGYQFLQSLNLFLLSIYLQELDMCSGSKNKVASSNSAMEARFLKLSEGALFSANSILLELSASDDVEGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMFGSSKVVKYLIETGKVDVNRACGSDLTTALHCATAGGSCSSLETIKLLLDGSADVDCVDAYGRKPVDLIVSACRIVLNSGRKAMEMLLRGDGMAGEGDLSLYLEEDQQKITASQSAKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKATLSARDLDLEMELLGLEKNASQLQHQQQLIDEIARLSSPSYWSADVSRSAELKPANLDDMFGSLDSSLLSQLQGTSLKTPISAQVQSPTGLQMRQNINQLRASYPANLSSSPVKKPTSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVTRLPGFTGAANSAATMSSHLSDWNSPDGKLDWGVHGNDLNKLKKSASFGIRNNGIGTPTFAPPVEEPDVSWVNSLVKDVPSESFGLFGAEKRPYSLKREINEMLPSWMEQQLYAEQEQIVA 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6015143 6018016 + CaPI482276_07g004360.1 Cam07g0436 130729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0436 732 SMART ANK_2a 123 153 IPR002110 GO:0005515(InterPro)
Cam07g0436 732 SMART ANK_2a 158 190 IPR002110 GO:0005515(InterPro)
Cam07g0436 732 SMART c3hfinal6 316 342 IPR000571 GO:0046872(InterPro)
Cam07g0436 732 SMART c3hfinal6 351 374 IPR000571 GO:0046872(InterPro)
Cam07g0436 732 ProSiteProfiles Zinc finger C3H1-type profile. 316 343 IPR000571 GO:0046872(InterPro)
Cam07g0436 732 ProSiteProfiles Ankyrin repeat profile. 123 147 IPR002110 GO:0005515(InterPro)
Cam07g0436 732 PANTHER UNKEMPT FAMILY MEMBER 117 689 IPR045234 -
Cam07g0436 732 MobiDBLite consensus disorder prediction 380 431 - -
Cam07g0436 732 FunFam Zinc finger CCCH domain-containing protein 66 274 342 - -
Cam07g0436 732 ProSiteProfiles Ankyrin repeat profile. 158 193 IPR002110 GO:0005515(InterPro)
Cam07g0436 732 MobiDBLite consensus disorder prediction 386 431 - -
Cam07g0436 732 Gene3D - 317 379 - -
Cam07g0436 732 Gene3D - 76 218 IPR036770 -
Cam07g0436 732 Pfam Ankyrin repeats (3 copies) 123 190 IPR002110 GO:0005515(InterPro)
Cam07g0436 732 ProSiteProfiles Ankyrin repeat region circular profile. 123 147 - -
Cam07g0436 732 SUPERFAMILY Ankyrin repeat 114 204 IPR036770 -
Cam07g0436 732 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 320 341 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0436 Cam-Chr7:6015143 Cam10g1442 Cam-Chr10:28090514 6.10E-120 dispersed
Cam10g1676 Cam-Chr10:30768265 Cam07g0436 Cam-Chr7:6015143 2.30E-133 transposed
Cam02g2020 Cam-Chr2:33213292 Cam07g0436 Cam-Chr7:6015143 2.50E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52253 PF12796 Ank_2 2.60E-09 CL0465 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0436 - - - 0.0