Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0481 ATGGATGAAACTCAAACCCCATTTCATTTTACCTCTTTTTGGAGATACCCATTTGGGGATTCTGGGATTTTCTTCACTCACTCTCCTGATCGGCTCTGTTTTTCACATAAGAAGAAGGGGAAATGGAAGGTTCTGAGGAAAAACCCTAATGGGTTTGTTTCTGGTGGATTGGGTTTGTGGTTTTTGTTGCTTAATTTGGTTTTTATTCCACCTGTTTTTACCCAGGATTGGGATGGTGTGGTTGTAACTCAGGCTGATTTTCAATCCCTTCAGGCATTTAAGCAAGAGCTTGATGACCCTAAAGGGTTTTTGAAGAGTTGGAATGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGCTGGGATTAAATGTGCTAAAGGACAGGTTATTGTAATACAGCTTCCTTGGAAGGGATTAGGAGGAAGAATCACTGAGAAGATTGGCCAACTTCAGGCACTTAGGAAGCTCAGTTTACATGACAACTTCATTGGTGGATCAATCCCTTCTTCATTGGGGCTTCTTCCAAATCTTAGAGGGGTTCAGTTGTTCAATAATCGATTTTCTGGTTCGATCCCGGCTTCATTGGGACTTTGTCCTTTGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACTGGAACAATCCCACCTACTTTGGCGAACTCCACCAAGCTTTATTGGCTTAACTTGAGCTTTAACTCGTTTTCGGGTCCGATTCCATCGAGTCTTGCTCGCTCGGTGTCCCTTACTTTCCTTGCTCTTCAACATAACAATCTCTCAGGCAGCATTCCCGACTCCTGGGGGGGCGATGTCACCGAGCGAAACCAGGTGTTTCAGCTCAAGTCTCTGACTCTTGATGGCAATCTCCTCTCAGGTACCATACCAATTTCTTTAAGCAAGTTAAGTGAGCTTCAAGTGGTTTCCCTTAGCCACAATAGGTTAAATGGTGGCATTCCAGAAGAAATTAGTAAGCTTTCTCTGCTGAAAACTCTGGATGTTTCTAATAATTTCCTTAATGGAAGTTTGCCCCAAAGTTTTGATAAATTGAGAAAACTCTCTATTCTCAACTTGAGTAGAAACAGACTCAATGGTCAAATTCCTGCAACTTTAGGGAACATTTCAACTCTTACACAACTTGATTTATCTAAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGATTTGCAAGGTCTTCAATCCTTAAATGTCTCATACAACGACCTTTCGGGTTCAGTTCCTCCCGCTCTCGCTGAAAAATTTGCTGCAAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTTCGATTCGGTGCCCCTCCCCAGCCCCTTCTGAAGAAGCTCCTGCTCCTCCACCAGAAAGTATGACAACCCGCCATCGGAAGTTAAGTACTAAAGATATAATCCTCATAGCAGCAGGAGCCCTCCTTGTAGTATTGGTTATAGTTTTCTTTGTATTGCTCTGCTGCTTGATTAGGAAAAGGGCTGCTACAAAAGGAAAGGATGGTGGTGAGGCTGCAGCAGCTGGGGGTGCTAGGGTCGAGAAGGGTGTCCCTCCGACTAGCAGTGAAGTCGAAGCAGGAGCAGGGGATGCTGGTGGAAAGCTCGTCCATTTCGACGGGCAAACAGTCTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTGAAGAGATTGAGAGAGAAAATCACTAAGAGCCAAAAGGAATTTGAAGCAGAGGTTAACATACTTGGTAAGATCAGGCATCCAAATTTACTAGCCTTGAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTAGTTTTCGATTACATGCCGAACGGGAGTCTTACAGCGTTCCTGCACGCTCGTGGACCAGACACATCCATTGATTGGCCGACAAGGATGAAGATAGCTCAGGGTATGACGCGTGGCCTGTGCCATCTTCACACGCACGAGAACAGTATCCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACATTAATGCTAAGATTGCAGATTTTGGCTTGTCAAGGTTGATGACTGCAGCTGCAAGCTCAAATGTGATAGCAACAGCAGGGGCACTGGGGTACCGAGCACCAGAGCTCTCAAAGCTGAAAAAAGCAAACACAAAAACCGACATTTACAGCCTTGGAGTAATCATACTGGAACTCTTGACTGGTAAATCCCCTGGTGAAGCCATGAACGGAGTCGATTTGCCACAATGGGTTGCATCGATCGTCAAAGAGGAGTGGACTAATGAAGTTTTTGATTTGGAGCTGATGAGGGATGCATCTACAATCGGCGATGAGTTACTAAACACTCTGAAACTCGCTTTGCATTGTGTCGACCCTTCACCGTCAGCGAGACCGGAAGTTCAACAAGTTTTGCAACAACTGGAGGAGATTAGGCCAGAAACTGCTCCAAGTTCTGGGGATGATGGAGCAGGAGGAGGAGGAGCCCCTTCAACAAGTGAGTGA 2550 44.94 MDETQTPFHFTSFWRYPFGDSGIFFTHSPDRLCFSHKKKGKWKVLRKNPNGFVSGGLGLWFLLLNLVFIPPVFTQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWAGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNFIGGSIPSSLGLLPNLRGVQLFNNRFSGSIPASLGLCPLLQTLHISNNLLTGTIPPTLANSTKLYWLNLSFNSFSGPIPSSLARSVSLTFLALQHNNLSGSIPDSWGGDVTERNQVFQLKSLTLDGNLLSGTIPISLSKLSELQVVSLSHNRLNGGIPEEISKLSLLKTLDVSNNFLNGSLPQSFDKLRKLSILNLSRNRLNGQIPATLGNISTLTQLDLSKNNLSGEIPASLADLQGLQSLNVSYNDLSGSVPPALAEKFAASSFVGNIQLCGFSGSIRCPSPAPSEEAPAPPPESMTTRHRKLSTKDIILIAAGALLVVLVIVFFVLLCCLIRKRAATKGKDGGEAAAAGGARVEKGVPPTSSEVEAGAGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLTAFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHTHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGAGGGGAPSTSE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6738384 6741035 - CaPI482276_07g004810.1 Cam07g0481 130774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0481 849 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515(InterPro)
Cam07g0481 849 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515(InterPro)
Cam07g0481 849 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 268 446 - -
Cam07g0481 849 SUPERFAMILY L domain-like 123 418 - -
Cam07g0481 849 Gene3D Transferase(Phosphotransferase) domain 1 633 836 - -
Cam07g0481 849 SMART LRR_typ_2 397 421 IPR003591 -
Cam07g0481 849 SMART LRR_typ_2 150 174 IPR003591 -
Cam07g0481 849 SMART LRR_typ_2 325 348 IPR003591 -
Cam07g0481 849 SMART LRR_typ_2 349 373 IPR003591 -
Cam07g0481 849 SMART LRR_typ_2 301 324 IPR003591 -
Cam07g0481 849 Gene3D Phosphorylase Kinase; domain 1 561 632 - -
Cam07g0481 849 ProSiteProfiles Protein kinase domain profile. 555 826 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam07g0481 849 CDD STKc_IRAK 561 826 - -
Cam07g0481 849 MobiDBLite consensus disorder prediction 505 531 - -
Cam07g0481 849 Gene3D Ribonuclease Inhibitor 321 443 IPR032675 -
Cam07g0481 849 Gene3D Ribonuclease Inhibitor 83 241 IPR032675 -
Cam07g0481 849 Gene3D Ribonuclease Inhibitor 242 320 IPR032675 -
Cam07g0481 849 Pfam Protein tyrosine and serine/threonine kinase 558 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam07g0481 849 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Cam07g0481 849 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 83 267 - -
Cam07g0481 849 Pfam Leucine Rich Repeat 225 244 IPR001611 GO:0005515(InterPro)
Cam07g0481 849 Pfam Leucine Rich Repeat 248 268 IPR001611 GO:0005515(InterPro)
Cam07g0481 849 Pfam Leucine Rich Repeat 153 172 IPR001611 GO:0005515(InterPro)
Cam07g0481 849 Pfam Leucine Rich Repeat 201 221 IPR001611 GO:0005515(InterPro)
Cam07g0481 849 FunFam Pollen receptor-like kinase 1 632 836 - -
Cam07g0481 849 FunFam Leucine-rich repeat receptor-like protein kinase 540 631 - -
Cam07g0481 849 MobiDBLite consensus disorder prediction 825 849 - -
Cam07g0481 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 72 837 IPR052451 -
Cam07g0481 849 SUPERFAMILY Protein kinase-like (PK-like) 559 827 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1435 Cam-Chr3:29231402 Cam07g0481 Cam-Chr7:6738384 1.20E-52 dispersed
Cam07g0481 Cam-Chr7:6738384 Cam11g0283 Cam-Chr11:4305745 1.50E-69 dispersed
Cam07g0481 Cam-Chr7:6738384 Cam10g2202 Cam-Chr10:35427424 5.30E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85301 PF07714 PK_Tyr_Ser-Thr 1.20E-40 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0481 - - - 0.0