Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0497 ATGGGAGCTTCTAGCCTCCCTTGTTTTTCATCGCTATTTGCAGTTTTTCCACTTCAAAATAATGCTCACAACAAATCTTTACCATTTTCTTCAAATCTTTCAAAACCCCTTTTCCGATTGAACAGGATTTGCTGCGGAGTCCCTGAGAGTGGAATTCAGCAAAACCCCTCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGAAGAGTACAATTTGGCCATGAAGAAGATGATGAGGAACCCCTATGAATATCACCATGAACTGGGCATGAACTATACTGTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAGAAACCCGAAGATATCAATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTCGAGTACTGGGGAATAGACTTACAATCAATTATAGAAAGATGTAAAGAAATTGGAATTCATCATATGAGGCAACCAGCAAAAGATTTTGATCCAGATTCCTTGAGAAATGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCGATCTCAGAGGGTAAAGGAAAAGTGTACGTGCATTGCACTGCTGGACTGGGAAGGGCCCCCGCTGTCGCAATAGCTTACCTGTACTGGTTTTGCGGAATGAATTTAAATACAGCATATGAAGCACTGACCTCTAAAAGACCTTGTGGACCAAATAAAAGAGCGATCCGCGGAGCCACATACGATCTATCTAAAAATGACCCATGGAAGGAGCCATTTGAGAAACTTGAGTTCATTGTCATTCCATTTTTACTAGGATGA 801 41.82 MGASSLPCFSSLFAVFPLQNNAHNKSLPFSSNLSKPLFRLNRICCGVPESGIQQNPSTSRPSSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKEIGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPNKRAIRGATYDLSKNDPWKEPFEKLEFIVIPFLLG 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6993582 6996137 - CaPI482276_07g004970.1 Cam07g0497 130790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0497 266 Gene3D Protein tyrosine phosphatase superfamily 85 243 IPR029021 -
Cam07g0497 266 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311(InterPro)
Cam07g0497 266 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203(InterPro)
Cam07g0497 266 SMART dsp_5 92 242 IPR020422 GO:0006470(InterPro)
Cam07g0497 266 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 75 260 - -
Cam07g0497 266 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470(InterPro)
Cam07g0497 266 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 55 250 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Cam07g0497 266 Pfam Dual specificity phosphatase, catalytic domain 115 230 IPR000340 GO:0016311(InterPro)
Cam07g0497 266 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 234 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0497 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2347 Cam-Chr5:31535491 Cam07g0497 Cam-Chr7:6993582 8.80E-38 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g1749 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 1.4e-189 659.8
Cam02g0659 . 123 692 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Cam10g1514 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.4 8.4e-159 557.0
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cam06g1369 . 1 1244 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1082.8
Cam09g1020 . 87 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.4 7.5e-113 404.1
Cam06g1976 . 16 903 Protein tyrosine phosphatase (PTP) family AT5G23720 65.6 0.0e+00 1094.0
Cam06g0590 . 75 212 Protein tyrosine phosphatase (PTP) family AT3G06110 58.0 2.6e-42 168.7
Cam09g2119 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cam05g2347 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 2.1e-116 415.6
Cam07g0497 . 10 256 Protein tyrosine phosphatase (PTP) family AT3G10940 68.3 4.8e-97 351.3
Cam10g1259 . 142 590 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 1.6e-203 705.7
Cam02g1872 . 98 299 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cam09g1098 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cam03g1077 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.2e-55 210.7
Cam10g0240 . 86 418 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 5.0e-101 364.8
Cam11g0207 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 6.3e-80 294.7
Cam11g0207 . 27 209 Protein tyrosine phosphatase (PTP) family AT5G56610 51.6 2.2e-45 179.1
Cam02g1872 . 132 300 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cam09g1098 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.0e-70 260.8
Cam03g1077 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cam03g1077 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 4.2e-79 291.2
Cam02g1872 . 123 295 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cam07g0301 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.3e-63 239.2
Cam10g1514 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.4 8.4e-159 557.0
Cam02g0659 . 89 692 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 3.3e-220 761.5
Cam01g1749 . 115 690 Protein tyrosine phosphatase (PTP) family AT3G19420 60.2 1.0e-197 686.8
Cam01g1749 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 1.4e-189 659.8
Cam02g0659 . 123 692 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Cam06g1369 . 1 1244 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1082.8
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cam02g2272 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.0e-69 258.8
Cam10g0176 . 92 380 Protein tyrosine phosphatase (PTP) family AT2G35320 61.2 7.8e-101 364.0
Cam04g0737 . 10 420 Protein tyrosine phosphatase (PTP) family AT3G09100 65.7 1.5e-157 553.5
Cam04g0737 . 10 420 Protein tyrosine phosphatase (PTP) family AT5G01290 60.5 1.6e-140 496.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012743 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 28