Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0517 ATGGCTTTTTACTCACCATTTTCCTCCCTCTTCCTTCTTCCTTTCTTCTTCATCTCTTTTCCCTTCGCTTTCGCCAACTACGGTGGCTGGCAGAGCGGCCACGCCACCTTTTATGGCGGTGGTGACGCATCTGGCACCATGGGTGGAGCTTGTGGGTATGGGAACTTGTATAGCCAAGGGTACGGCACAAACACGGTGGCGCTTAGCACAGCGCTATTCAACAACGGGCTAAGTTGTGGGGCTTGCTTCGAAATGACTTGTACAAATGATCCTAAATGGTGTCTTCCTGGAACCATTAGAGTCACTGCCACCAACTTCTGCCCTCCTAACTTTGCTCTCCCCAACAACAATGGCGGCTGGTGCAACCCTCCACTCCAACATTTCGACATGGCTGAACCTGCCTTTCTTCAGATCGCACAGTACCGTGCTGGAATCGTCCCCGTCTCCTTTCGTAGAGTACCATGTATGAAAAAAGGTGGAGTGAGGTTCACAATCAATGGCCACTCTTACTTCAACCTTGTTTTGATCACGAACGTGGGCGGCGCAGGTGATGTCCACGCTGTGTCCATAAAGGGGTCTCGAACAGGATGGCAAGCCATGTCCAGAAATTGGGGCCAAAATTGGCAAAGCAACAACTATCTCAACGGCCAAGGTCTTTCCTTTCAAGTCACTCTGAGCGATGGTCACACTCTCACTGCCTATAATCTCGTCCCTTCCAATTGGCAATTTGGCCAAACATTTGAAGGCCCTCAATTCTAA 759 50.2 MAFYSPFSSLFLLPFFFISFPFAFANYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGHTLTAYNLVPSNWQFGQTFEGPQF 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7464474 7467489 - CaPI482276_07g005170.1 Cam07g0517 130810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0517 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Cam07g0517 252 Gene3D - 160 252 IPR036749 -
Cam07g0517 252 CDD DPBB_EXPA_N 29 155 - -
Cam07g0517 252 Pfam Lytic transglycolase 65 150 IPR009009 -
Cam07g0517 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Cam07g0517 252 FunFam Expansin 21 156 - -
Cam07g0517 252 SUPERFAMILY Barwin-like endoglucanases 29 178 IPR036908 -
Cam07g0517 252 SMART dpbb_1 65 150 IPR007112 -
Cam07g0517 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Cam07g0517 252 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Cam07g0517 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576(InterPro)
Cam07g0517 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576(InterPro)
Cam07g0517 252 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Cam07g0517 252 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Cam07g0517 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576(InterPro)
Cam07g0517 252 Gene3D - 21 156 IPR036908 -
Cam07g0517 252 PANTHER EXPANSIN-A15 20 252 IPR002963 GO:0009664(InterPro)
Cam07g0517 252 FunFam Expansin 160 252 - -
Cam07g0517 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Cam07g0517 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664(InterPro)
Cam07g0517 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664(InterPro)
Cam07g0517 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664(InterPro)
Cam07g0517 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664(InterPro)
Cam07g0517 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664(InterPro)
Cam07g0517 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664(InterPro)
Cam07g0517 252 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Cam07g0517 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664(InterPro)
Cam07g0517 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0331 Cam-Chr7:4460313 Cam07g0517 Cam-Chr7:7464474 8.20E-104 dispersed
Cam07g0517 Cam-Chr7:7464474 Cam11g0988 Cam-Chr11:17050594 2.90E-106 dispersed
Cam10g0641 Cam-Chr10:10019613 Cam07g0517 Cam-Chr7:7464474 1.50E-67 transposed
Cam11g0593 Cam-Chr11:7488743 Cam07g0517 Cam-Chr7:7464474 9.70E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0517 - - - 0.0