Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0579 ATGATGGCGGAGATTTCTGGTGATGGAGGTGGGTTTTTGCCGGAGGTTAATAATGGACGGGGGTTGGATTCTCAGGCTACGCCGACGCCGGTTACAGCACCGAATCCCACCCCCTTGACGGTGTCGGGATCTTTCAAAGAAGGGAAAAGCTCGTCGCGGCGCCGGACGTCGGTCAGGCCGAGTATGGACGCTGACGACTTCTTGAACTTGTTGCACGGCTCGGATCCGGTGAAGGTGGAGCTTAATCGCCTCGAGAATGAAGTGCGAGATAAGGATAGAGAGCTAGGAGAAGCTCAGGCGAAGATCAAGGCTTTGAAGTTGTCCGAGCGGCTTAGAGAAAAGGCAGTTGAAGAGCTGACTGAAGAACTATCAAGGGCCGAGGAGAAGTTGAAGTTAACAGAATCTCTTCTTGAAAGCAAGAATCTTGAAATAAAGAAAATCAATGATGAGAAGAAGGCTTCAATGGCAGCTCAATTTGCTGCTGAAGCCACTCTTAGGAGGGTACATGCTGCTCAAAAGGATGATGACATGCCTCCAATTGAAGCCATTCTTGCACCTCTGGAAGCTGAGCTCAAGCTTGCACGGCAGGAGATTGCTAAGCTTCAGGATGACAATAAAGCATTGGATCGGCTTACCAAATCAAAGGAAGCAGCTTTGATTGATGCTGAGAGGACTGTTCAAAGTGCCCTGGCTAAGGCCTCTATGGTGGATGATTTACAGAATAAAAATCAGGAGTTAATGAAACAGATCGAGATTTGCCAGGAAGAAAATAAAATCTTGGATAAGATGCACAGACAGAAAGTTGCAGAGGTTGAAAAATTAACGCAAACTGTGAGGGAGCTGGAGGAGGCTGTTCTTGCTGGTGGTGCAGCAGCAAATGCTGTGAGGGATTATCAGCGCAAAGTTCAAGAGATGAATGAGGAAAGGAAAACTCTTGATAGAGAGTTGGCTCGTGCAAAGGTAACAGCCAACAGAGTGGCTGTTGTAGTTGCAAATGAATGGAAAGATGCAAATGATAAGGTTATGCCAGTAAAACAATGGCTTGAAGAACGAAGATTCTTGCAGGGAGAAATGCAGCAACTTCGTGATAAACTTGCTATAACTGAGCGAACTGCAAAGTCTGAAGCACAATTGAAAGAGAAGTATCAACTGCGACTTAGAGTGCTTGAAGAGAGTTTGAGAGGATCTTCTGGCGGTAACAATCGAAGTACTCCAGAAGGGAGAAGTGTAAGCAATGGCCCTTCTCGTCGGCAATCTCTGGGTGGTGTTGACAACATTTCAAAATTAACTTCCAATGGATATCTATCCAAAAGGACACCAGGTTCTCAGTTTAGATCTTTGTCCTCAAGCAGCAGCACAGTGTTGAAACATGCTAAAGGCACGTCAAAATCATTTGATGGAGGCACGAGGTTATTGGACCGAGGAAAGGTGTCATTAAATGGACTTCTACCCAGTTATTCATTCAATCAGTCCTGTGATGCAACCAAGGACAGTGAAGTAAATAACGATTGGAAAAGTAATCCTGATGAAAAAGGAAATGAGTCTCCAACACTTGAGAGTGAAGACAGTGTTCCGGGCATGTTGTATGATTTACTTCAAAAGGAGGTTATAGCTTTGAGAAAAGCTGGTCATGAGAAAGATCAAAGCCTTAAAGACAAAGATGACGCCATTGAGATGTTAGCAAAGAAGGTAGAGACGCTGACCAAAGCAATGGAGGTTGAGGCAAAGAAGATGAGAAGGGAAGTGGCTGCCATGGAGAAGGAGGTAGCAGCTATGCGTGTGGAGAAAGAGCAGGAGAACAGGGCAAAGCGATTTGGTGGTAGCACGAAGGGTCCCGTTAGTGCAGCACAACTGCTTCCTGGAAGAAATGTTGGACGAGAGATCAGCAAAGAAGGGGAGAAAGAAAAAGTTAAAAAAGAAAGAATAGTTGACTTGTTGGCTAACCACCTTCTGTCAGATGCTGAATGCATCCATTTGATGTGGCCTATCCGAGATTACAAGAAGAATCAAGAACCGGAAGTTGACAAGCTTAAGCAACCTGTACTTGATGATATAACTAAGTCACTCACTGAACGATATGGTCTAAATTTTACCCGAAAACACATTTCATCTCTTTGGTTTCTTTGTAAGCAGGAGGCATCCTTATTTGACATAACGAATCAAGCTTGTGGACTGTTCAGCCCTTCCGAGGTGACAGATGTGAGGGCCCGATACTCAGCTTCAACAGATGATGGAGGCACCATCGTCTGCTTTTTAGACTTCCATGATATTAAAGATTCATGCATAAACTAG 2292 44.81 MMAEISGDGGGFLPEVNNGRGLDSQATPTPVTAPNPTPLTVSGSFKEGKSSSRRRTSVRPSMDADDFLNLLHGSDPVKVELNRLENEVRDKDRELGEAQAKIKALKLSERLREKAVEELTEELSRAEEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALIDAERTVQSALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAITERTAKSEAQLKEKYQLRLRVLEESLRGSSGGNNRSTPEGRSVSNGPSRRQSLGGVDNISKLTSNGYLSKRTPGSQFRSLSSSSSTVLKHAKGTSKSFDGGTRLLDRGKVSLNGLLPSYSFNQSCDATKDSEVNNDWKSNPDEKGNESPTLESEDSVPGMLYDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVEKEQENRAKRFGGSTKGPVSAAQLLPGRNVGREISKEGEKEKVKKERIVDLLANHLLSDAECIHLMWPIRDYKKNQEPEVDKLKQPVLDDITKSLTERYGLNFTRKHISSLWFLCKQEASLFDITNQACGLFSPSEVTDVRARYSASTDDGGTIVCFLDFHDIKDSCIN 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9349981 9360538 + CaPI482276_07g005790.1 Cam07g0579 130872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0579 763 MobiDBLite consensus disorder prediction 498 517 - -
Cam07g0579 763 MobiDBLite consensus disorder prediction 20 47 - -
Cam07g0579 763 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 56 606 IPR009768 GO:0007010(InterPro)|GO:0008017(InterPro)
Cam07g0579 763 Coils Coil 81 150 - -
Cam07g0579 763 Coils Coil 236 284 - -
Cam07g0579 763 MobiDBLite consensus disorder prediction 1 61 - -
Cam07g0579 763 Coils Coil 344 371 - -
Cam07g0579 763 MobiDBLite consensus disorder prediction 490 523 - -
Cam07g0579 763 Coils Coil 184 211 - -
Cam07g0579 763 Coils Coil 561 602 - -
Cam07g0579 763 MobiDBLite consensus disorder prediction 394 459 - -
Cam07g0579 763 Pfam Microtubule-associated protein 70 65 617 IPR009768 GO:0007010(InterPro)|GO:0008017(InterPro)
Cam07g0579 763 MobiDBLite consensus disorder prediction 393 470 - -
Cam07g0579 763 Gene3D - 626 742 IPR029033 -
Cam07g0579 763 Coils Coil 295 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0579 K27854 - - csv:101212718 1081.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2186 Cam-Chr1:34491378 Cam07g0579 Cam-Chr7:9349981 4.70E-99 dispersed
Cam04g0556 Cam-Chr4:18970310 Cam07g0579 Cam-Chr7:9349981 1.30E-109 dispersed
Cam04g0557 Cam-Chr4:18984986 Cam07g0579 Cam-Chr7:9349981 1.70E-46 dispersed
Cam07g0458 Cam-Chr7:6347808 Cam07g0579 Cam-Chr7:9349981 3.40E-31 dispersed
Cam07g0459 Cam-Chr7:6358260 Cam07g0579 Cam-Chr7:9349981 3.50E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g500 . . . . . Bpe10g01001 Bma14g01927 Bma15g00026 Cmo04g01102 . Cma04g01029 Cma04g00077 Car04g00961 Car04g00073 Sed04g3001 . . Bhi07g00400 Tan04g1510 Cmetu10g0919 Lac13g1329 Hepe01g0590 . . Cla07g00538 Cam07g0579 Cec07g0638 Cco07g0604 Clacu07g0582 Cmu07g0618 Cre07g0954 . Cone19ag0733 Cone6ag0360 Cone9ag0390 Lsi04g01101 . . . Blo06g01031 . Bda07g01745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01255 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000868 2 2 0 4 3 3 5 3 3 2 2 2 5 1 2 6 3 6 5 3 2 1 2 3 3 2 2 6 2 2 87