Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0604 ATGGCATCCGCCGCATTGAGCACTTCAATACCAACAAGAGGAGACTCATTTTCAAATTTGATTCCAAACGGACTCTTAAATTCCAAAGTGATTAATTTTTCCTTTCTAAAACGTGTCGCCCCACGAGGGGTGGCGGCAACGGTTAGGTCGACGTGGAGGACGGCGGAGCACGGTGGAGCATTGGCGACGGAGGAGGATGAGGAGATGGGCAGGATCCGGCGGCTGCAGAACGGGTCGGACGTGAGAGGGGTGGCGATCGAGGGGGAGAAAGGGAGGGCGGTGGATTTGACGGCGGCGGCGGTGGAGGCAATAGCGGAGAGTTTCGCGGAGTGGGTGATGGAGGGGTTGGAAACAGGGCGGCGCGTGAGTGTGTCGGTGGGGAGAGACCCTAGAATTTCCGGCGGTGCTTTGAGTGTTGCAGTGTTCGCGGGAGTTAGTAGGGCGGGGTGTTTGGTGTTTGATATGGGACTTGCCACAACGCCGGCGTGCTTCATGAGCACCGTCTTGCCTCCTTTTTCTTATGATGCTTCCATCATGTTAACAGCATCGCACTTACCTTATACACGAAATGGGATGAAGTTCTTCACGAAGAGAGGAGGGCTAAGCTCGCCGGAGGTGGAGGAGATATGCAACAGAGCCGCCGTGAAGTACGCTAACAGAGTGGTCAAAGTCTCCACTCTTCTCCGAACGCCGCCGTCCAAGGTGGATTTCATGGCGGCTTATTCACAGCATCTCAGAGATATCATTAAGCAAAGAATCAATCATCCTTTGCATTATGATACTCCTCTCAAAGGATTTCAGATAATAGTGAACGCGGGCAACGGATCGGGAGGCTTCTTCACATGGGATGTCTTGGACAAGCTGGGCGCAGACACCTTTGGCTCTCTTCATCTCAACCCAGACGGCATGTTCCCCAACCACATCCCTAATCCAGAAGACAAAACCGCCATGTCACTCACTCGAGCCGCCGTCCTCGAACATGGAGCCGACCTCGGTGTCGTCTTCGACACTGACGTTGACCGCAGTGGCGTCGTCGATCATGAGGGCAACCCAATCAACGGCGACAAGCTCATTGCCCTAATGTCGGCCATCGTACTCCGAGAGCACCCTGGCACGACCATCGTCACCGACGCCCGCACCAGCGTCGCCCTCACAAAGTTCATCACCAACCGAGGTGGGCAACATTGTCTCTACCGCGTCGGGTATCGGAATGTCATCGACAAAGGAATCCAACTCGACGCGGACGGAATCGAGACGCATCTCATGATGGAGACGTCGGGGCACGGGGCACTTAAGGAGAATTATTTTTTGGATGATGGAGCTTACATGGTAGTGAAGATTATCATTGAAATGGTGAGAATGAAGTTAAAGGGATCAGATGAAGGAATTGGGAGTCTTATAAAAGATCTTGAAGACCCATTGGAGTCTGTGGAATTGAGATTGAATGTGATCTCTGAGCCAAGTTTTGCAAAAGAGAAGGCTGTGGAGGCCATTGAGACATTCAGAAACTTTGTCCAGGAAGGGAAGCTTGAGGGATGGGAACTGGACTCATGTGGAGATTGTTGGGTGCATGAAGGCTGCTTGGTGGACTTAAATGACCATCCCAAGCCAATTGATGCACAAATGTACAGGGTTAAAGTATATGATAAGGAAAATGGGGAAGTTGGTTGGGTACACTTGAGGCAGAGCATTCACAATCCAAACCTTGCTTTGAATATGCAATCATCTCTGCCTGGAGGCTGCCTCCAAATCACTAGAGACTTTAGAGATAA 1772 51.64 MASAALSTSIPTRGDSFSNLIPNGLLNSKVINFSFLKRVAPRGVAATVRSTWRTAEHGGALATEEDEEMGRIRRLQNGSDVRGVAIEGEKGRAVDLTAAAVEAIAESFAEWVMEGLETGRRVSVSVGRDPRISGGALSVAVFAGVSRAGCLVFDMGLATTPACFMSTVLPPFSYDASIMLTASHLPYTRNGMKFFTKRGGLSSPEVEEICNRAAVKYANRVVKVSTLLRTPPSKVDFMAAYSQHLRDIIKQRINHPLHYDTPLKGFQIIVNAGNGSGGFFTWDVLDKLGADTFGSLHLNPDGMFPNHIPNPEDKTAMSLTRAAVLEHGADLGVVFDTDVDRSGVVDHEGNPINGDKLIALMSAIVLREHPGTTIVTDARTSVALTKFITNRGGQHCLYRVGYRNVIDKGIQLDADGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIEMVRMKLKGSDEGIGSLIKDLEDPLESVELRLNVISEPSFAKEKAVEAIETFRNFVQEGKLEGWELDSCGDCWVHEGCLVDLNDHPKPIDAQMYRVKVYDKENGEVGWVHLRQSIHNPNLALNMQSSLPGGCLQITRDFRD 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10635665 10642432 - CaPI482276_07g006040.1 Cam07g0604 130897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0604 590 SUPERFAMILY Phosphoglucomutase, first 3 domains 353 457 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Cam07g0604 590 SUPERFAMILY Phosphoglucomutase, first 3 domains 240 351 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Cam07g0604 590 FunFam Phosphomannomutase/phosphoglucomutase isoform B 346 467 - -
Cam07g0604 590 PRINTS Phosphoglucomutase/phosphomannomutase family signature 329 344 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Cam07g0604 590 PRINTS Phosphoglucomutase/phosphomannomutase family signature 300 313 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Cam07g0604 590 PRINTS Phosphoglucomutase/phosphomannomutase family signature 176 190 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Cam07g0604 590 PRINTS Phosphoglucomutase/phosphomannomutase family signature 265 284 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Cam07g0604 590 PANTHER PHOSPHOHEXOSE MUTASE 66 588 IPR050060 GO:0004615(PANTHER)|GO:0009570(PANTHER)
Cam07g0604 590 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 262 349 IPR005845 GO:0005975(InterPro)
Cam07g0604 590 Gene3D - 76 224 - -
Cam07g0604 590 SUPERFAMILY Phosphoglucomutase, first 3 domains 79 249 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Cam07g0604 590 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 353 454 IPR005846 GO:0005975(InterPro)|GO:0016868(InterPro)
Cam07g0604 590 Gene3D - 346 468 - -
Cam07g0604 590 CDD PMM_PGM 75 590 - -
Cam07g0604 590 FunFam phosphomannomutase/phosphoglucomutase isoform X1 267 344 - -
Cam07g0604 590 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 75 212 IPR005844 GO:0005975(InterPro)|GO:0016868(InterPro)
Cam07g0604 590 Gene3D - 267 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0604 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0604 Cam-Chr7:10635665 Cam08g1199 Cam-Chr8:18304120 1.30E-104 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g450 . . . . . . Bma14g01883 . . . . . . . Sed01g2847 . . Bhi07g00357 Tan04g1549 Cmetu10g0494 . Hepe01g0551 . . Cla07g00577 Cam07g0604 Cec07g0674 Cco07g0644 Clacu07g0608 Cmu07g0641 Cre07g0980 Cone13ag0751 . . . Lsi04g01125 . Chy10g00233 Cme10g01586 . Blo11g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009666 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 2 1 33