Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0630 ATGGCCGGGATTGTCGCCGGCGACAGCGACAGTGCACCGGCTTTGGCTCTACTGGACTTTGTTCGCGATGTTGTTCGAATGTCGGCGGGGACGAACACTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAAATCAGGGACTTCAATGGCGTCCAATTTCGACCTGTTGATGCATCTTCGTCTTCTTCTTCTTCTTGTGGCGCTGTTACTGTGAGGGATTCGTCTCAGTTTCCATGGCTTTGTGATTTAGTGACGGCATTGAAGGATACTAAGCGCCTCATTTTCATCGCTTCTACTTTCCGGTCCTGCGGCTCTTCTTCTGAAGAAGTTGCCAAGAAGATACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGCAATCTTCCATATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAATTGAGAAGAGCAGCAGAAAAATATGGGTCTCTGACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTTGAAGAAAAATGTGGATCTCTTAAATTTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTATTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGGCGGTGTGGATCAATTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTAATGGACAGGATAATGACTCTGCCAGAAAGAGTGGGGACCAGGTGAAGAACCCAGATGGAGTTTCAATCCCTGATGATTTTCTATGCCCCATATCCTTGGAAATAATGAGAGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGACTCTCACCCCAAATTATGTGTTGCGAAGTCTCATTAGTCAATGGTGTGTTAATAACAATATTGAGCAACCTACGGGATTAACCAATGGGAAGATCAAAAAGTGTGACGGATCATACCGTGACGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTAACTAGCCATTCGATTGAGGAGCGGAGAGCATCTGTGACTGAACTTCGATCTCTATCTAAAAGAAGCACGGATAATAGAATACTGATTGCTGAAGCAGGAGCAATTCCTGCCTTGGTCAATCTATTAACTTCTGATGACGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAAAACAACAAGGGATTGATTATGCTTGCTGGTGCAATACCTTCCATTGTTCAAGTTCTTAGAGTTGGAAGTATGGAAGCAAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCTATTCCAGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGAAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACGGACTCAGTTAACTCGATGATCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTTCTGAGGACCGGATTGCCTCGCAACAAGGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAACGAGATACCGACAACCTTTCTTGTATAAGTAGGCTTGGTGCCGTGATTCCACTGACAGAGCTTGCCAAGAGTGGCACGGAGAGAGCGAAAAGGAAGGCTACTTCATTGTTGGAGCATCTTCGAAAACTGCAGCAGCTATAG 1974 43.87 MAGIVAGDSDSAPALALLDFVRDVVRMSAGTNTGEVFKKDCTDLVRRIVLLTHLFEEIRDFNGVQFRPVDASSSSSSSCGAVTVRDSSQFPWLCDLVTALKDTKRLIFIASTFRSCGSSSEEVAKKILFQFQCVTWKLEKALGNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDLLNLNNWVDNFDVEENGIVDHEITVKFDAFPNCRGLMNGGVDQLIFKGLEKLPSSSEACSNGQDNDSARKSGDQVKNPDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSVNSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11647810 11650969 - CaPI482276_07g006300.1 Cam07g0630 130923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0630 657 Coils Coil 637 657 - -
Cam07g0630 657 FunFam RING-type E3 ubiquitin transferase 275 351 - -
Cam07g0630 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 351 IPR013083 -
Cam07g0630 657 FunFam RING-type E3 ubiquitin transferase 361 454 - -
Cam07g0630 657 SMART arm_5 530 570 IPR000225 GO:0005515(InterPro)
Cam07g0630 657 SMART arm_5 448 488 IPR000225 GO:0005515(InterPro)
Cam07g0630 657 SMART arm_5 407 447 IPR000225 GO:0005515(InterPro)
Cam07g0630 657 SMART arm_5 571 611 IPR000225 GO:0005515(InterPro)
Cam07g0630 657 SMART arm_5 489 529 IPR000225 GO:0005515(InterPro)
Cam07g0630 657 SMART arm_5 613 653 IPR000225 GO:0005515(InterPro)
Cam07g0630 657 Gene3D - 558 656 IPR011989 -
Cam07g0630 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515(InterPro)
Cam07g0630 657 SMART Ubox_2 281 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam07g0630 657 FunFam RING-type E3 ubiquitin transferase 557 656 - -
Cam07g0630 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 500 542 IPR000225 GO:0005515(InterPro)
Cam07g0630 657 MobiDBLite consensus disorder prediction 251 275 - -
Cam07g0630 657 Gene3D - 359 452 IPR011989 -
Cam07g0630 657 Gene3D - 453 557 IPR011989 -
Cam07g0630 657 SUPERFAMILY RING/U-box 274 351 - -
Cam07g0630 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515(InterPro)
Cam07g0630 657 Pfam U-box domain 278 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam07g0630 657 Coils Coil 153 173 - -
Cam07g0630 657 SUPERFAMILY ARM repeat 368 651 IPR016024 -
Cam07g0630 657 FunFam RING-type E3 ubiquitin transferase 455 555 - -
Cam07g0630 657 CDD RING-Ubox_PUB 279 331 IPR045210 -
Cam07g0630 657 PANTHER U BOX DOMAIN-CONTAINING 36 653 - -
Cam07g0630 657 Pfam Armadillo/beta-catenin-like repeat 407 446 IPR000225 GO:0005515(InterPro)
Cam07g0630 657 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515(InterPro)
Cam07g0630 657 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2095 Cam-Chr2:33809438 Cam07g0630 Cam-Chr7:11647810 1.70E-60 dispersed
Cam05g2319 Cam-Chr5:31267579 Cam07g0630 Cam-Chr7:11647810 8.40E-09 dispersed
Cam06g0858 Cam-Chr6:12193031 Cam07g0630 Cam-Chr7:11647810 1.30E-16 dispersed
Cam07g0563 Cam-Chr7:8461102 Cam07g0630 Cam-Chr7:11647810 5.80E-20 dispersed
Cam07g0630 Cam-Chr7:11647810 Cam11g0631 Cam-Chr11:7846123 6.20E-39 dispersed
Cam07g0630 Cam-Chr7:11647810 Cam01g0623 Cam-Chr1:6822297 1.00E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0630 - - - 0.0