Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0668 ATGGCAATTTTACCCACCACCTCTTCAAGATTGGATCTCTCCATCTCTGTACGAGGCTTCAATTCATTCTCATCACCACTTCCTCCATCTGTAGGGAGAGATTTGGACATGAACAAAGCTCCAGATGAAGAAGAATGGATGATGGGAAGTATGGAGGAAGATGAAGAAAATAACAATGGAAGCAATAATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTTCGACAAAATCATACTTTAAACCCAAAACAGAAGGAGACTTTGGCAGAAGTGTTGAAGTTGAAGCCAAGGCAGGTTGAAGTTTGGTTTCAGAATCGAAGGGCCAGGAGCAAGTTAAAGCAAACAGAAATGGAATGTGAGTATTTGAAAAGATGGTTCGGGTTATTGACGGAACAGAATAAGAGACTGCAGAAGGAGGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACGGTGATTTCACCGCACAGCTGCGAGCCGCTGCCAGCGTCGAATCTCACAATGTGCCCACGCTGCGAGCGCGTGACAACCACAGCCCTCGACAAGACCCGCATTGTCGTTTAA 591 46.7 MAILPTTSSRLDLSISVRGFNSFSSPLPPSVGRDLDMNKAPDEEEWMMGSMEEDEENNNGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13376876 13382540 + CaPI482276_07g006680.1 Cam07g0668 130961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0668 196 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g0668 196 SMART halz 121 164 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g0668 196 FunFam Homeobox-leucine zipper protein 18 50 126 - -
Cam07g0668 196 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 50 188 IPR050762 -
Cam07g0668 196 SMART HOX_1 63 125 IPR001356 GO:0003677(InterPro)
Cam07g0668 196 CDD homeodomain 64 122 IPR001356 GO:0003677(InterPro)
Cam07g0668 196 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Cam07g0668 196 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam07g0668 196 Gene3D - 57 129 - -
Cam07g0668 196 Coils Coil 134 154 - -
Cam07g0668 196 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677(InterPro)
Cam07g0668 196 Pfam Homeodomain 65 119 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0618 Cam-Chr1:6715785 Cam07g0668 Cam-Chr7:13376876 1.20E-55 dispersed
Cam07g0668 Cam-Chr7:13376876 Cam10g1725 Cam-Chr10:31297265 1.20E-33 dispersed
Cam07g0668 Cam-Chr7:13376876 Cam09g0376 Cam-Chr9:4132383 1.00E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52265 PF00046 Homeodomain 1.10E-16 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0668 K09338 - csv:101222713 365.54