Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0790 GAACAGACACGAGTTCTATTGACAAGTGCTGCATATGTGCATTTGAAACATGCTGAAGTCTCTAAGTTCACTCGAAACCTTTCTCCAGCAAGTCGAGCCATCTTACTCTCTGGACCTGCTGAACTCTACCAACAAATGCTTGCCAAGGCATTGGCTCACTATTTTGAAGCCAAACTGTTGCTTTTGGATATTACTGACTTTTCCCTAAAGATTCAGAGCAAATATGGCACTTCAGTCAAGGAATCTGGTTTTAAAAGGTCTACTTCAGAGTCAACACTGGAGAGATTGTCTGGCTTATTTGGATCATTTTCAATCCTTCCACCCAGGGAAGAACAAAAAATAGGTTCATTGCGAAGGCAACGTAGTGGTGTGGAACTTGCATCCTGGGGAAAGGAAGGATCTTCCAATCTTCCAAAACTTCGAAGAAATGCCTCTGCTGCGGCTAACATTAATAACCTTGCTTCGCAATGCAATGTCGACAAATCAGCTCCCCTTAAGCACATGAGCAGCTGGGCTTTTGAGGAGAAACTTCTTATACAGTCTCTGTATAAGGTTCTTCTTTATGTGTCGAAAGCAAGTCCCATTGTTTTATATCTTCGTGACGTAGATAGGTTTTTATCCAAGTCAAATAGGGTGTATATCTTGTTCCAGAAAATGCTACAAAAACTGTCTGGGTCAATTTTGATTCTTGGTTCACGTACTATTGATTCGAGCAATGATTATATGGAGGTGGATGAGAGGCTCTCTGCTCTTTTTCCTTATAATATTGAGATCAGGCCACCCGAAGATGAATCTCATCATGTCAGTTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATCAAGGTTCAGGATAACCGAAACCATATCATGGAAGTTCTTTCAGCAAATGATCTTGATTGTGACGATCTTGACTCAATCTGTGTTGCTGACACCTTGGTTCTCAGTAATTACATAGAAGAGATTGTGGTGTCTGCAATTTCTTATCATCTAATGAACAACAAGGATCCGGAATATAGAAACGGAAAACTGATCATTTCGAGCAAGAGTTTGTCCCATGGACTGAACATATTCCAGGCAGGAAAATCCACTGGCAAAAGTACTATACAGCTTGAAGCACAAGCTGAAGCTTCAAAGGACTTGGGAGCAGCAGTGAAATCCGAAGCAAAATCCGATACCACAGCTGCTGAAAACAGAAGTGAAACAGCACCTGCTGCTGCTGTGGCAAAAACTGATGGAGAGACTGCTGCTCCAGCTGCAAAAGCCCCTGAAGTTCCACCAGATAATGAGTTTGAGAAACGTATTAGGCCAGAGGTCATACCGGCGAATGAGATTGGTGTTACATTTTCTGATATTGGTGCCATGGAGGAGATCAAAGATTCTCTTCAGGAACTCGTAATGCTTCCTCTTCGAAGGCCGGATTTATTTCTTGGAGGGCTTTTGAAGCCTTGCAGAGGCATATTGTTGTTTGGACCTCCTGGAACTGGAAAGACTATGTTAGCTAAGGCCATAGCAAAAGAAGCCGGAGCAAGCTTCATTAATGTATCGATGTCTACCATAACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGGGCTTTATTCACATTGGCAGCCAAAGTCTCTCCCACCATCATATTTGTAGACGAGGTAGATAGTATGCTTGGCCAGCGAACAAGAGTTGGTGAGCATGAGGCGATGAGGAAGATAAAGAATGAGTTCATGACTCACTGGGATGGGCTCTTGACGAAGCCAGGGGAGCGTGTACTCGTTCTTGCAGCAACGAATAGGCCATTTGACCTCGATGAAGCCATCATACGGCGTTTTGAGAGAAGAATAATGGTGGGGTTACCAACAGCAGAAAATAGAGAAATGATATTGACAACTCTCTTGGGGAAAGAAAAGGTGGAAGAAGGGCTAGACATGAAGGAGCTGGCTACAATGACAGAAGGATACAGTGGAAGTGATCTCAAGAACTTCTGCATGACGGCTGCGTATCGACCTGTTCGGGAACTAATACAGCAAGAAAGACTAAAGGATATGGAGAAAAAACGAAGAGCTGCCGAAGGACAGAATAAGGCAGGGGATGGAGCTGGAGAAAGCAAAGAAGAAAGAGTAATCACCCTCAGGGCATTGAATATGGAGGATTTCAAACTAGCAAAGAATCAGGTTGCAGCCAGTTTTGCAGCAGAAGGAGCAATGATGAGTGAATTGAAGCAATGGAATGAGTTATATGGGGAAGGAGGATCTAGAAAGAAGCAACAGTTGACTTATTTCCTGACAATAATTTCAAGAATTGCACGATTAGTGACTTTTGAAAGGGTAGTTTGGACTGACAACAATACCGATTTTTGTGCTTGCTTAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGATATTTTATGAAAGCAAAATTTTAA 2661 41.56 EQTRVLLTSAAYVHLKHAEVSKFTRNLSPASRAILLSGPAELYQQMLAKALAHYFEAKLLLLDITDFSLKIQSKYGTSVKESGFKRSTSESTLERLSGLFGSFSILPPREEQKIGSLRRQRSGVELASWGKEGSSNLPKLRRNASAAANINNLASQCNVDKSAPLKHMSSWAFEEKLLIQSLYKVLLYVSKASPIVLYLRDVDRFLSKSNRVYILFQKMLQKLSGSILILGSRTIDSSNDYMEVDERLSALFPYNIEIRPPEDESHHVSWKSQLEEDMKMIKVQDNRNHIMEVLSANDLDCDDLDSICVADTLVLSNYIEEIVVSAISYHLMNNKDPEYRNGKLIISSKSLSHGLNIFQAGKSTGKSTIQLEAQAEASKDLGAAVKSEAKSDTTAAENRSETAPAAAVAKTDGETAAPAAKAPEVPPDNEFEKRIRPEVIPANEIGVTFSDIGAMEEIKDSLQELVMLPLRRPDLFLGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERVLVLAATNRPFDLDEAIIRRFERRIMVGLPTAENREMILTTLLGKEKVEEGLDMKELATMTEGYSGSDLKNFCMTAAYRPVRELIQQERLKDMEKKRRAAEGQNKAGDGAGESKEERVITLRALNMEDFKLAKNQVAASFAAEGAMMSELKQWNELYGEGGSRKKQQLTYFLTIISRIARLVTFERVVWTDNNTDFCACLKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKGYFMKAKF 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19800412 19810850 + CaPI482276_07g007900.1 Cam07g0790 131083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0790 886 MobiDBLite consensus disorder prediction 388 431 - -
Cam07g0790 886 Pfam ATPase family associated with various cellular activities (AAA) 487 617 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam07g0790 886 ProSitePatterns AAA-protein family signature. 590 609 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam07g0790 886 Gene3D - 619 723 - -
Cam07g0790 886 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 760 IPR051701 GO:0005741(PANTHER)
Cam07g0790 886 SMART AAA_5 483 620 IPR003593 GO:0016887(InterPro)
Cam07g0790 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 686 IPR027417 -
Cam07g0790 886 Pfam AAA+ lid domain 641 683 IPR041569 -
Cam07g0790 886 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 446 620 - -
Cam07g0790 886 Gene3D - 446 729 IPR027417 -
Cam07g0790 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 276 IPR027417 -
Cam07g0790 886 MobiDBLite consensus disorder prediction 681 702 - -
Cam07g0790 886 MobiDBLite consensus disorder prediction 790 886 - -
Cam07g0790 886 Coils Coil 786 878 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0790 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0790 Cam-Chr7:19800412 Cam11g0730 Cam-Chr11:9091393 1.90E-54 dispersed
Cam03g0367 Cam-Chr3:4798803 Cam07g0790 Cam-Chr7:19800412 1.00E-150 transposed
Cam09g0454 Cam-Chr9:4792838 Cam07g0790 Cam-Chr7:19800412 2.40E-104 transposed
Cam09g0589 Cam-Chr9:5850327 Cam07g0790 Cam-Chr7:19800412 6.90E-129 transposed
Cam01g0082 Cam-Chr1:1130530 Cam07g0790 Cam-Chr7:19800412 1.40E-304 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75