Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0800 ATGGAGGATTGGGATTTGCAAGCAATTGTAAAAGGGTGCAATGGAGTATCAATTACTTCTTCAACACCAAGGCTTATGGAAGATCCAAATAATTTGTACTCTTTTCTAAGGGAAGAAGATCAATTCTTTTCTTGTAGTGTTTATAATAATCCTCAACTTTCAAGTTCTTCTTGTCCTTCAGTGGTTTATGATGAGTTTGAAGGATTATTTGGAAGAAGCTGTTCATCCAATATTTTTCCAATTTTGCATCCAAACAATTCTGCCTCCATTTCTGATCTTCTCAGGGACTTTAAGGAACCAGAAAAGCTTCATTACAAGAACCAAATCCAAACAACTAAACAGAAACAAAGCAAGAAAAGTCGGCAAAATAGGGTAGTAAAAGAGGTGAAAGCGGATAGCGTATGTTCAGATTCATGGGGATGGAGAAAATATGGACAGAAACCAATCAAAGGGTCGCCATATCCAAGAAGCTATTACAGATGCAGCTCCTCAAAAGGATGCTCCGCTCGAAAGCAAGTCGAACGGAGCCTCTCCGATCCAGATATCTTCGTTGTAACCTACACAGCCGAGCACAACCATGCCGAGCCTACTCGCCGCAACGCCCTCGCCGGGACCACTCGGAAAAAGTTCCCGGCGCTAGAGACCCCGAATTTCGACATGATTCTCTCACCAAATAATTCTACTTCTGTGGCTTCCATTGAAGAAGAACATCCAATGGAAGGTGTGGCAGAAGGGGAAGTTCTGATTGATATGCCATTTGAATTCTTTACTGGTTTGGAGGATTTGCTTTTTGGATGA 798 41.85 MEDWDLQAIVKGCNGVSITSSTPRLMEDPNNLYSFLREEDQFFSCSVYNNPQLSSSSCPSVVYDEFEGLFGRSCSSNIFPILHPNNSASISDLLRDFKEPEKLHYKNQIQTTKQKQSKKSRQNRVVKEVKADSVCSDSWGWRKYGQKPIKGSPYPRSYYRCSSSKGCSARKQVERSLSDPDIFVVTYTAEHNHAEPTRRNALAGTTRKKFPALETPNFDMILSPNNSTSVASIEEEHPMEGVAEGEVLIDMPFEFFTGLEDLLFG 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20106383 20107816 - CaPI482276_07g008000.1 Cam07g0800 131093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0800 265 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 71 216 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam07g0800 265 SMART WRKY_cls 135 195 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g0800 265 Pfam WRKY DNA -binding domain 137 193 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g0800 265 Gene3D WRKY domain 118 197 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g0800 265 ProSiteProfiles WRKY domain profile. 130 196 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g0800 265 SUPERFAMILY WRKY DNA-binding domain 133 196 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0800 K13426 - - csv:101213208 384.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0800 Cam-Chr7:20106383 Cam10g1124 Cam-Chr10:24329911 4.30E-23 dispersed
Cam07g0799 Cam-Chr7:20042763 Cam07g0800 Cam-Chr7:20106383 1.80E-12 tandem
Cam01g0090 Cam-Chr1:1181597 Cam07g0800 Cam-Chr7:20106383 6.10E-35 wgd
Cam05g0153 Cam-Chr5:1694607 Cam07g0800 Cam-Chr7:20106383 3.30E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g45 . . . . Bpe05g00659 . . . . Cmo16g00630 . . Car02g00702 . . Cpe14g00491 Cpe05g00637 . . . . . . . Cla07g00748 Cam07g0800 Cec07g0865 Cco07g0839 Clacu07g0780 Cmu07g0788 Cre07g1142 . . Cone6ag0812 Cone9ag0811 . . . Cme07g01614 . . Bda07g01906 . . . Bma05g00832 . . Cmo02g01102 Cmo15g01124 . Cma16g00580 . . . . . . . . . . . . . . . . . . . Csa04g00611 Chy07g01200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007717 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52269 PF03106 WRKY 1.10E-25 CL0274 Cam TF