Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0831 ATGATTCCAGGAGCTTCAAGTGGTCTTGGTGAAGAGGCCACACGTGTTCTTGCATTACGAGGAGTCTATGTCATTATGGCTGTAAGGAATGTTGAAGCAGGAAGAAAAGTAAAAGAAGCAATATTGAAGCAATCCCCCTCGGCTAAAATTGATGTCATGGAGTTAGATCTTAGTTCGATGGAATCTGTAAGGAAGTTTGCATCCGATTATATTGCATCAGACCGTGCACTAAATATTCTCATGAACAATGCCGGCGTTATGGCTACTCCTTTTATGCTTTCCCATGATGGCATAGAATTGCAGTTTGCAACAAATCATTTAGGACATTTTCTTCTGACGAACCTTCTGATGGAAACCATGAAAAAAACTGTGCTTGAAAGCAAAAAGGAGGGAAGGATTGTCAATCTATCATCAGAGGGTCACCGGTTGACATATGGTGAAGGAATTCGTTTTGATAAAATCAATGATGAATCAGAGTATAGAACTCTCTTAGCTTATGGACAATCAAAGCTTTCCAACATACTGCATGCAAAAGAGCTTGCCAGGCGGTTAAAGGAAGAAGGGGTAGAAATAACAGCCAACGCTCTTCATCCTGGAGCAATTGCTACCAATCTGCTACGCTTCCATGGTTTCATTAACGTTGTTGCTAGTTCGGTTGCTAAATTTGTGCTTAAAAGTGTCCAGCAGGGAGCAGCAACTCAGTGTTATGTAGCACTGAATCCCCAAGTCAAAGGGGTAAGTGGAGAGTATTTTGTTGATAGTAATATAGCCAACCCAACCAATCATGCCAAAGATGTGGAATTGGCCAAGAAACTATGGGATTTCAGTGTGGATCTAACCAGCCCAAAATAA 852 41.31 MIPGASSGLGEEATRVLALRGVYVIMAVRNVEAGRKVKEAILKQSPSAKIDVMELDLSSMESVRKFASDYIASDRALNILMNNAGVMATPFMLSHDGIELQFATNHLGHFLLTNLLMETMKKTVLESKKEGRIVNLSSEGHRLTYGEGIRFDKINDESEYRTLLAYGQSKLSNILHAKELARRLKEEGVEITANALHPGAIATNLLRFHGFINVVASSVAKFVLKSVQQGAATQCYVALNPQVKGVSGEYFVDSNIANPTNHAKDVELAKKLWDFSVDLTSPK 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20772580 20775508 + CaPI482276_07g008310.1 Cam07g0831 131124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0831 283 CDD retinol-DH_like_SDR_c_like 1 273 - -
Cam07g0831 283 PANTHER RETINOL DEHYDROGENASE 2 280 - -
Cam07g0831 283 PRINTS Glucose/ribitol dehydrogenase family signature 125 141 IPR002347 -
Cam07g0831 283 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Cam07g0831 283 PRINTS Glucose/ribitol dehydrogenase family signature 166 185 IPR002347 -
Cam07g0831 283 PRINTS Glucose/ribitol dehydrogenase family signature 75 86 IPR002347 -
Cam07g0831 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 IPR002347 -
Cam07g0831 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 IPR002347 -
Cam07g0831 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 IPR002347 -
Cam07g0831 283 Pfam short chain dehydrogenase 2 140 IPR002347 -
Cam07g0831 283 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 257 IPR036291 -
Cam07g0831 283 Gene3D - 1 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0831 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0105 Cam-Chr1:1355379 Cam07g0831 Cam-Chr7:20772580 5.00E-103 dispersed
Cam01g0741 Cam-Chr1:8220558 Cam07g0831 Cam-Chr7:20772580 2.50E-20 dispersed
Cam07g0831 Cam-Chr7:20772580 Cam10g2062 Cam-Chr10:34392568 6.70E-91 dispersed
Cam04g1296 Cam-Chr4:26766448 Cam07g0831 Cam-Chr7:20772580 9.40E-27 transposed
Cam09g1007 Cam-Chr9:10484532 Cam07g0831 Cam-Chr7:20772580 1.80E-18 transposed
Cam01g0104 Cam-Chr1:1348297 Cam07g0831 Cam-Chr7:20772580 6.70E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126