Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0833 ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAGAGCAGCAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAACAAGATCAAGAAATGGAAGAATGTTGTAACAACAACAACAACAATAATAATTGTTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATACTTCCCACTTGATTCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGACCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATCGATTGGCGACGCCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTCATAATACCTATAATCATCATCATCATAATCATAATCGTCATCCTGTTCTTGACGGCTCGTCCTACGGTGGGGCATCGGCTTTTTACCATTTGAGATCCCCCTCCACAGCGCCGCAGATAGAGGCAGTGCCGGTTGTAGCAGATGGAAAGGGTGGTGGTAGCAGTGGTGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTAAGGCTTTTTGGTGTCAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACAACAATGTTGTCGTCGTCTCAATTCCATGTTTATAATGGGATGCCGATGCCGATGCCGATGCTGATGCCGATGCCGATGCAGATGCCAATAAATAATAACAACGTATCAACCATGGAGTTCTTCGAGAAAGGGAAGTCATCGATGTCGTCGTCCTTTGATTTTGATACTTGA 1158 43.96 MDDFGSSSRFHHHQYYNFESSSSSNNNNNNRRSRDFDDDEQQQQQDQEMEECCNNNNNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFHNTYNHHHHNHNRHPVLDGSSYGGASAFYHLRSPSTAPQIEAVPVVADGKGGGSSGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMPMLMPMPMQMPINNNNVSTMEFFEKGKSSMSSSFDFDT 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20827098 20828255 - CaPI482276_07g008330.1 Cam07g0833 131126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0833 385 ProSiteProfiles B3 DNA-binding domain profile. 72 176 IPR003340 GO:0003677(InterPro)
Cam07g0833 385 MobiDBLite consensus disorder prediction 15 30 - -
Cam07g0833 385 MobiDBLite consensus disorder prediction 15 52 - -
Cam07g0833 385 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 308 IPR044800 GO:0003700(InterPro)
Cam07g0833 385 Gene3D - 65 180 IPR015300 -
Cam07g0833 385 Pfam B3 DNA binding domain 72 175 IPR003340 GO:0003677(InterPro)
Cam07g0833 385 SUPERFAMILY DNA-binding pseudobarrel domain 69 174 IPR015300 -
Cam07g0833 385 CDD B3_DNA 70 159 IPR003340 GO:0003677(InterPro)
Cam07g0833 385 FunFam B3 domain-containing protein 65 184 - -
Cam07g0833 385 SMART B3_2 72 176 IPR003340 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0833 K09287 - - csv:101220139 494.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0239 Cam-Chr6:4189233 Cam07g0833 Cam-Chr7:20827098 1.50E-52 dispersed
Cam07g0833 Cam-Chr7:20827098 Cam08g1201 Cam-Chr8:18321638 2.30E-09 dispersed
Cam10g1832 Cam-Chr10:32433294 Cam07g0833 Cam-Chr7:20827098 1.30E-38 transposed
Cam01g0127 Cam-Chr1:1580753 Cam07g0833 Cam-Chr7:20827098 1.70E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g277 . . . . . . Bma07g01046 Bma14g00089 Cmo06g00500 Cmo16g00647 . . . Car15g01205 . Cpe14g00507 . . . . . . . . Cla07g00776 Cam07g0833 Cec07g0888 Cco07g0865 Clacu07g0810 Cmu07g0816 Cre07g1170 . . . . . . . Cme07g01632 Blo03g00788 Blo19g00130 Bda07g00161 . Bpe08g00913 Bpe11g00381 . . . . . Cma06g00497 Cma16g00597 . . Cpe08g00992 . . . . . . . . . . . . . . . . Csa04g00592 Chy07g01218 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g1832 . 19 134 RAV Transcription Factor Family AT2G36080 76.7 7.3e-48 187.2
Cam06g0239 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 5.4e-43 171.0
Cam01g0127 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cam07g0833 . 64 175 RAV Transcription Factor Family AT2G36080 69.2 1.6e-39 159.5
Cam05g2502 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.0e-38 154.8
Cam01g0127 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Cam06g0239 . 74 326 RAV Transcription Factor Family AT2G46870 50.2 4.2e-54 208.8
Cam07g0833 . 67 313 RAV Transcription Factor Family AT2G46870 51.1 5.1e-52 201.8
Cam05g2502 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 2.9e-39 159.5
Cam10g1832 . 14 130 RAV Transcription Factor Family AT2G46870 65.8 4.2e-38 155.6
Cam10g1832 . 12 141 RAV Transcription Factor Family AT3G11580 65.9 5.0e-44 174.9
Cam06g0239 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 7.5e-40 161.0
Cam01g0127 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 6.3e-39 157.9
Cam07g0833 . 67 175 RAV Transcription Factor Family AT3G11580 63.9 1.8e-38 156.4
Cam01g0127 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.2e-52 203.0
Cam06g0239 . 82 318 RAV Transcription Factor Family AT3G61970 51.9 3.2e-51 199.1
Cam07g0833 . 66 203 RAV Transcription Factor Family AT3G61970 68.8 3.9e-49 192.2
Cam05g2502 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cam01g0127 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 6.8e-42 168.3
Cam07g0833 . 68 175 RAV Transcription Factor Family AT4G01500 66.4 5.9e-38 155.2
Cam10g1832 . 19 215 RAV Transcription Factor Family AT5G06250 54.2 9.3e-50 194.1
Cam06g0239 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.7e-40 163.3
Cam01g0127 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 1.9e-39 159.8
Cam05g2502 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 6.9e-37 151.4
Cam06g1364 . 45 339 RAV Transcription Factor Family AT1G50680 52.5 8.6e-85 310.8
Cam03g1400 . 47 330 RAV Transcription Factor Family AT1G50680 53.7 5.9e-78 288.1
Cam06g1364 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 3.4e-84 308.9
Cam03g1400 . 52 279 RAV Transcription Factor Family AT1G51120 60.6 1.5e-76 283.5
Cam05g2502 . 1 347 RAV Transcription Factor Family AT1G13260 62.4 1.8e-106 382.9
Cam03g0994 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.1e-92 337.0
Cam01g0127 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.0e-38 154.8
Cam06g0239 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cam10g1832 . 19 131 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cam05g2502 . 6 314 RAV Transcription Factor Family AT3G25730 64.3 3.2e-100 362.1
Cam03g0994 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.6e-89 323.9
Cam10g1832 . 19 131 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cam05g2502 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 2.5e-111 399.1
Cam03g0994 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cam10g1832 . 19 147 RAV Transcription Factor Family AT1G68840 64.6 5.7e-39 158.7
Cam01g0127 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cam06g0239 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
Cam05g2502 . 6 314 RAV Transcription Factor Family AT3G25730 64.3 3.2e-100 362.1
Cam03g0994 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.6e-89 323.9
Cam10g1832 . 19 131 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cam06g1364 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 3.4e-84 308.9
Cam03g1400 . 52 279 RAV Transcription Factor Family AT1G51120 60.6 1.5e-76 283.5
Cam10g1832 . 12 141 RAV Transcription Factor Family AT3G11580 65.9 5.0e-44 174.9
Cam06g0239 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 7.5e-40 161.0
Cam01g0127 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 6.3e-39 157.9
Cam07g0833 . 67 175 RAV Transcription Factor Family AT3G11580 63.9 1.8e-38 156.4
Cam01g0127 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 6.8e-42 168.3
Cam07g0833 . 68 175 RAV Transcription Factor Family AT4G01500 66.4 5.9e-38 155.2
Cam10g1832 . 19 134 RAV Transcription Factor Family AT2G36080 76.7 7.3e-48 187.2
Cam06g0239 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 5.4e-43 171.0
Cam01g0127 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cam07g0833 . 64 175 RAV Transcription Factor Family AT2G36080 69.2 1.6e-39 159.5
Cam05g2502 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.0e-38 154.8
Cam10g1832 . 19 215 RAV Transcription Factor Family AT5G06250 54.2 9.3e-50 194.1
Cam06g0239 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.7e-40 163.3
Cam01g0127 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 1.9e-39 159.8
Cam05g2502 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 6.9e-37 151.4
Cam01g0127 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Cam06g0239 . 74 326 RAV Transcription Factor Family AT2G46870 50.2 4.2e-54 208.8
Cam07g0833 . 67 313 RAV Transcription Factor Family AT2G46870 51.1 5.1e-52 201.8
Cam05g2502 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 2.9e-39 159.5
Cam10g1832 . 14 130 RAV Transcription Factor Family AT2G46870 65.8 4.2e-38 155.6
Cam06g1364 . 45 339 RAV Transcription Factor Family AT1G50680 52.5 8.6e-85 310.8
Cam03g1400 . 47 330 RAV Transcription Factor Family AT1G50680 53.7 5.9e-78 288.1
Cam01g0127 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.2e-52 203.0
Cam06g0239 . 82 318 RAV Transcription Factor Family AT3G61970 51.9 3.2e-51 199.1
Cam07g0833 . 66 203 RAV Transcription Factor Family AT3G61970 68.8 3.9e-49 192.2
Cam05g2502 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cam05g2502 . 1 347 RAV Transcription Factor Family AT1G13260 62.4 1.8e-106 382.9
Cam03g0994 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.1e-92 337.0
Cam01g0127 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.0e-38 154.8
Cam06g0239 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cam10g1832 . 19 131 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cam05g2502 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 2.5e-111 399.1
Cam03g0994 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cam10g1832 . 19 147 RAV Transcription Factor Family AT1G68840 64.6 5.7e-39 158.7
Cam01g0127 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cam06g0239 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52271 PF02362 B3 1.40E-27 CL0405 Cam TF