Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0904 ATGCTTTCCGAAGTTAACCAGTTGGAGACCACGACGATGAGGAAGAAATCTGCTAGTTTTCTCTTCAGATACTCTCGATTTTTTCACTCGGAACAGCTTTTGAATCTTAATCGCAATAATTCGTTTCTCCGTTCAGGAACTTCCTTGTGCATCCCAATTTCACAATATTTTGGTTCAATTCCGGGATGCAGAAAAGCTTTTCAGGATTCTGCGTTCAATTATTTTAGAATGCCTTGCGGATTTCAGTTCAGACGCATTACTTCATTATCGTCAGTGGTTCAGAGAAATTCTTCATTTTCGAGGTTAAATTCTGATGATATCGACTTTTTCCGGAGTATTTTGGGGGAGAAAAATGTAGTTCAGGATGAGGATAGGCTATTGGATGCAAATACAGATTGGTTGCGGAAGTTCAGAGGGTCGAGTAAGCTTTTACTACAACCTAGGAGCACAGAAGAGGTCTCTCAGATACTTAAATATTGCAACTCCAGAGACTTGCCTGTTGTACCCCAAGGTGGAAATACCGGTCTTGTTGGCGGAAGTGTTCCAGTTTTTGATGAAGTAATAATCAACCTTGGATTAATGAATGGCATCATATCTTTTGACAAGGTTAGCGGCATACTTGTTTGTGAAGCCGGCGGCATCTTAGAAAACTTGTCCTCTTTTCTGGACAACCAAGGATTTATAATGCCACTGGACTTAGGTGCTAAAGGAAGCTGCCAGATTGGTGGAAATGTTTCTACTAATGCAGGTGGTTTGCGCCTTGTTCGTTATGGATCTCTTCATGGCAGTGTACTTGGACTTGAAGTTGTTTTAGCAGATGGTAGTGTGCTTGACATGCTGGGAACTTTAAGAAAAGATAATACTGGATATGATTTAAAGCATTTGTTTATAGGCAGTGAAGGTACCTTGGGCATTATAACCAAGATTTCAATTCTTACCCCACCTAAACTACCTGCTACCAATGTAGCATTTCTTGGATGTAAAGATTACTCAAGCTGTCAGAAACTTCTAGTGGATGCAAAGAGGAAACTTGGGGAGATTCTTTCTGCATTTGAATTCCTGGATAACATGTCGATGGATTTGGTTCTCAATCATTTAGAAGGTACTCGTAATCCATTGCCTCCGACAATGCACAACTTTTATGTTCTGATCGAGACAACAGGCACTGATGAATCATATGACAAGGAAAAGCTTGAAGCATTTCTACTACGTTCGATGGAAGGTGGTTTAATCTCTGATGGTGTTCTTGCACAAGACATCAACCAAATATCCTCTTTTTGGCAGATCCGTGAGGGCATTCCAGAGGCATTGATGAAAGCAGGAGCTGTTTACAAATATGATTTGTCATTACCTGTTGAGAAGATGTACGAACTTGTCGAAGCAATGCGAACAAGACTTGGCAACTCCGCTAAAGTAATTGGTTACGGCCACCTTGGAGATGGTAATTTACATCTGAATATTTCAACTCCGCAATATGATGATGCGGTTTTAGCACAAATCGAACCCTTTGTCTATGAGTGGACTTCTAACCATCGTGGAAGCATCAGTGCAGAGCATGGCTTGGGATTGATGAAAGCCAACAAGATTTTTTACAGCAAGTCACCTGAAATTGTACAAATCATGGGTTCTATTAAGAAATTGCTGGACCCTCGTGGCATACTCAACCCCTATAAAGTTCTGCCGCACTCCCTTGGTTCCTAG 1701 41.09 MLSEVNQLETTTMRKKSASFLFRYSRFFHSEQLLNLNRNNSFLRSGTSLCIPISQYFGSIPGCRKAFQDSAFNYFRMPCGFQFRRITSLSSVVQRNSSFSRLNSDDIDFFRSILGEKNVVQDEDRLLDANTDWLRKFRGSSKLLLQPRSTEEVSQILKYCNSRDLPVVPQGGNTGLVGGSVPVFDEVIINLGLMNGIISFDKVSGILVCEAGGILENLSSFLDNQGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGLEVVLADGSVLDMLGTLRKDNTGYDLKHLFIGSEGTLGIITKISILTPPKLPATNVAFLGCKDYSSCQKLLVDAKRKLGEILSAFEFLDNMSMDLVLNHLEGTRNPLPPTMHNFYVLIETTGTDESYDKEKLEAFLLRSMEGGLISDGVLAQDINQISSFWQIREGIPEALMKAGAVYKYDLSLPVEKMYELVEAMRTRLGNSAKVIGYGHLGDGNLHLNISTPQYDDAVLAQIEPFVYEWTSNHRGSISAEHGLGLMKANKIFYSKSPEIVQIMGSIKKLLDPRGILNPYKVLPHSLGS 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22197691 22210302 - CaPI482276_07g009040.1 Cam07g0904 131197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0904 566 FunFam D-2-hydroxyglutarate dehydrogenase, mitochondrial 93 192 - -
Cam07g0904 566 FunFam D-2-hydroxyglutarate dehydrogenase mitochondrial 441 519 - -
Cam07g0904 566 PANTHER D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL 82 564 IPR051264 GO:0005739(PANTHER)
Cam07g0904 566 SUPERFAMILY FAD-binding/transporter-associated domain-like 105 315 IPR036318 GO:0050660(InterPro)
Cam07g0904 566 Pfam FAD binding domain 143 278 IPR006094 GO:0050660(InterPro)
Cam07g0904 566 SUPERFAMILY FAD-linked oxidases, C-terminal domain 290 562 IPR016164 GO:0003824(InterPro)|GO:0050660(InterPro)
Cam07g0904 566 Gene3D - 91 192 IPR016167 -
Cam07g0904 566 Gene3D - 441 519 - -
Cam07g0904 566 FunFam D-2-hydroxyglutarate dehydrogenase, mitochondrial 195 315 - -
Cam07g0904 566 Gene3D - 520 560 IPR016171 -
Cam07g0904 566 Pfam FAD linked oxidases, C-terminal domain 319 559 IPR004113 GO:0003824(InterPro)|GO:0050660(InterPro)
Cam07g0904 566 FunFam D-lactate dehydrogenase mitochondrial 520 560 - -
Cam07g0904 566 FunFam D-2-hydroxyglutarate dehydrogenase mitochondrial 317 439 - -
Cam07g0904 566 ProSiteProfiles PCMH-type FAD-binding domain profile. 137 316 IPR016166 GO:0071949(InterPro)
Cam07g0904 566 Gene3D - 318 439 - -
Cam07g0904 566 Gene3D - 196 316 IPR016169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0904 K18204 - - csv:101216583 1025.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0904 Cam-Chr7:22197691 Cam10g1758 Cam-Chr10:31662544 4.70E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1051 . . . . . Bpe13g00429 . . . Cmo16g00694 . . . . . . . . . . . . . . . . . . . . . . Cone12ag0783 . . . . Chy07g01262 . . . Bda11g01848 . . . . Bma06g00108 . . . Cma16g00636 . . . . Cpe14g00543 . . . . . . . Cla07g00835 Cam07g0904 Cec07g0957 Cco07g0947 Clacu07g0879 Cmu07g0879 Cre07g1240 Lsi07g00234 Csa04g00541 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009582 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33