Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0928 ATGGCAGTGGGAGTGGAGACGCTACTTTTGCTAATCTCCAGTAGATGCAGTTTCCTCCAACTCTGCCCCGCTCCTCATATTATCTTCAACCATCAACTCCCTCTCTCATCGATTATTTACAGAGACACCGGTTTGTTTCAGCTGCATTCTGTGGACGAATTTTCAGATAGAGAGTTTGTTACTTTGTCTCCGAGTCAAAAGCATTTGCTAAAAGGGACTAAGATGCAAACAAGATCTGTTTTGAGGCTTAATACTACTATATACTCTGGTGTTCAGAAAGCAATAGCTGCTGGACATCAAAGCGGACAGTGCTATATAAACAATTTGCTGCTTGGACGAGGGGAATTGTTGACTAAGGATTGCCGGTTGTCTCATTCCTTGCCATATTCAACATTTTTGATATCGAATACTTTGAATTTTTCACCAAGATTCCCGTCCAACAGAAAGTCTATGGCTGCTTCTAGTGTTAATGTTTCTGGTGATGTATATCTTGAAAATTTAGTCACAAACCGTGGAAATGCTTTAGAGCTTGCAACACCTGTGCGAGTATTTAACCATAGAAGTTATAGGAATTTCCCGAAAGCTCGTATGAGTTTGAGAAGGAAACAAGCATCCAATAATTGTCTTATCTCTCGCAGTTCAATTGATGTAATGCGTGTGAAGGGCAACTGCTTTCTGCAAGTTGGGTTGACCAATCTTCATGCCTTATCTCATGCGTGCTATGCTGCTGGGACTGCTAATTCTCCAGCTTTTGACAGCAATTCTCGTGATGAACAGTTCACAAATTCAACCACTTTGTCTAGCAAAGGTTTATTAGGTGAAAGAACTCTGAAGCTGCTTTCAGGATCATGCTATCTTCCCCATCCAGCTAAAGAAGAGACGGGAGGAGAGGATGCTCATTTTATTTGTGTGGATGAACATGTAGTTGGTGTTGCGGATGGTGTAGGTGGTTGGGCAGATGTTGGCATTGATGCTGGGAAGTTTGCTCGTGAACTTATGTCAAACTCGATAAATGCCATACAGGAACAGCCTGGGGACTCAGTTGACCCTGCCAAGGTGTTAGAGAAAGCTCACTCAGGCACTACAGCCAAGGGTTCTTCAACAGCTTGCATCATTTCTCTTTCTGAAAAGGGACTTCATGCTATTAATCTGGGGGATAGTGGATTTATAGTTATAAGAGATGGAAGCACTATTTTCAGATCTCCCGTTCAGCAACATGGCTTCAATTTTACTTATCAGTTGGAGAGCGGCAATGGTGGTGATTTACCCAGCTCTGGAGAGGTTTTCATGATACCTGTCGCACCGGGGGATGTCATAGTTGCTGGAACGGATGGCTTATTCGACAATCTATACAGTAATGAGATTTCAGCTGTTGTAGTTAATGCAGTTAGATCTGGGTTGGAACCCGAAGTAACTGCCCAAAACATAGCTGCTTTAGCTCGCCAAAGAGCACTAGATAGGAACCGGCAGACCCCATTTTCTGCTGCTGCTCAAGAGGCTGGTTATCGCTATTACGGTGGTAAGCTGGATGATATCACCGTTGTTGTCTCGTATATAGCAAGTTCCACAATTTTTCCATGGAGTGCAGTTGACGAAGCTGCAGAACGGTTTTTTCATCAATCATCGTTCGCAACTTTCCTGAGTAAAGAAACAGCAGCAGCATCCCACCGATTGCTGCAATCTCTTCACGTTCTTGCATCTAGTGAATGA 1710 43.33 MAVGVETLLLLISSRCSFLQLCPAPHIIFNHQLPLSSIIYRDTGLFQLHSVDEFSDREFVTLSPSQKHLLKGTKMQTRSVLRLNTTIYSGVQKAIAAGHQSGQCYINNLLLGRGELLTKDCRLSHSLPYSTFLISNTLNFSPRFPSNRKSMAASSVNVSGDVYLENLVTNRGNALELATPVRVFNHRSYRNFPKARMSLRRKQASNNCLISRSSIDVMRVKGNCFLQVGLTNLHALSHACYAAGTANSPAFDSNSRDEQFTNSTTLSSKGLLGERTLKLLSGSCYLPHPAKEETGGEDAHFICVDEHVVGVADGVGGWADVGIDAGKFARELMSNSINAIQEQPGDSVDPAKVLEKAHSGTTAKGSSTACIISLSEKGLHAINLGDSGFIVIRDGSTIFRSPVQQHGFNFTYQLESGNGGDLPSSGEVFMIPVAPGDVIVAGTDGLFDNLYSNEISAVVVNAVRSGLEPEVTAQNIAALARQRALDRNRQTPFSAAAQEAGYRYYGGKLDDITVVVSYIASSTIFPWSAVDEAAERFFHQSSFATFLSKETAAASHRLLQSLHVLASSE 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22947917 22953054 - CaPI482276_07g009280.1 Cam07g0928 131221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0928 569 PANTHER PROTEIN PHOSPHATASE 2C 242 521 IPR039123 GO:0004722(PANTHER)|GO:0006470(PANTHER)|GO:0009507(PANTHER)
Cam07g0928 569 Gene3D - 290 409 IPR036457 -
Cam07g0928 569 ProSiteProfiles PPM-type phosphatase domain profile. 280 519 IPR001932 -
Cam07g0928 569 Gene3D - 422 524 IPR036457 -
Cam07g0928 569 SUPERFAMILY PP2C-like 285 516 IPR036457 -
Cam07g0928 569 SMART PP2C_SIG_2 279 519 IPR001932 -
Cam07g0928 569 SMART PP2C_4 270 517 IPR001932 -
Cam07g0928 569 FunFam 5-azacytidine resistance protein azr1 288 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0928 K17508 - - csv:101215706 771.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2108 Cam-Chr5:29576725 Cam07g0928 Cam-Chr7:22947917 5.80E-126 dispersed
Cam07g0928 Cam-Chr7:22947917 Cam11g1774 Cam-Chr11:30264808 5.20E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g935 Blo04g00925 . . . Bpe15g00436 . . . Cmo04g00831 Cmo16g00707 . . . . . . . . . . . . . . . . . . . . . Cone8ag0798 Cone12ag0755 Cone6ag1609 Cone9ag1536 . . Chy07g01279 . . . . . . . . . . . . Cma16g00650 . . . . Cpe14g00554 . . . . . . . Cla07g00856 Cam07g0928 Cec07g0993 . Clacu07g0902 Cmu07g0902 Cre07g1270 Lsi07g00217 Csa04g00521 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83