Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0939 ATGGCCAAAATCTCATCGACTTCAGCATCGAGACTCCCTTGGCGAAACACAGCCCGAGAAGCAATGATATCACCATTCACATCCCTTGCAATCGCTCCCAACTCCAACGTACAATTAAAGACAGGACTGAAGTTCGCTCGATTTGCTATTGTGCATTTGGTTCCATCTGCTTCTGGATTTTCGTCTTCGTATTTGTTGAGCGGGCTGAAAATGGCTGTAGAGGAGAAACCAAGAGCCGATAATTCCGCAGAGTCCCCGACTTCGGTTCTGGAAGACGAGGACTTATGTAATGGGGAAAAGGAGATCAAGTTGGAGGAAGAGATAATTTTGGAAGCAAAAAATGGGGATTCCAGTCTTATATCAAAAGAAATGGCTGAGGAGGAACAGAAATTGCTGGAAGCTCGAGTTAAGGAAGAGGAGGCAAAAAGACTTGAGGATTCAACAGAATCTGCAAAGTTGAATGACAATCAGTTCACCAAATTGGATGAACTTCTCACTCAAACACAGTTATACTCAGAATTTTTGTTGGAGAAAATGGATGACATCACATTTAATGGAGTGGAGGAAGATAAGAAATCTGTTGAGAAAAGTAGTGGGCGTGGTTCAAAGAGGAAAACTGCTGCTCGTTATAATAATAGGAAGGCGAAAAGGGCTGTTGCAGCTATGCTGACTAGATCAAAAGAAGGTGAGCGGGATGAAGATGTAAACTTGACCGAGGAAGAAAGAATTGAGAAGGAGCAGAGTGAACTTGTACCTCTATTGACTGGTGGCAAGTTGAAGTCCTACCAACTCAAAGGTGTCAAATGGTTGATTTCGTTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGGCTTGGTAAGACAATTCAAACCATTGGCTTCCTTGCACATTTGAAGGGGAAGGGACTGGATGGACCTTACTTAGTAATTGCTCCTCTTTCCACACTTTCAAATTGGATAAATGAAATATCGAGATTTGTGCCCACCATGAGTGCTATTATTTATCATGGTGATAAAAAACAAAGGGAAGAGATTCGAAGAAAGTCCATGCCTAGAACAGTTGGACCTAAATTCCCCATAGTGGTTACTTCTTATGAGATTGCAATGAGTGATGCTAAAAAATTTTTGAGGCATTACAATTGGAAATATCTTGTCGTTGATGAGGGACATAGACTGAAAAACTCAAAATGCAAATTGCTGAAGGAGTTGAAGTACATAGCTGTTGAAAACAAACTGCTTCTAACTGGGACACCACTGCAGAATAATTTGGCAGAGCTTTGGTCATTGTTGAACTTTATTTTACCAGATATTTTTTCGTCCAATGAGGAATTTGAGTCATGGTTTGATCTCTCTGGAAAGTGTCATGCCGAGGAAAAAGAAGAAACACAAGAGAATAGAAAGGCCCAGGTGGTAGCAAAACTGCATGGAATACTGAGACCATTCTTACTTCGGAGAATGAAATCTGATGTTGAGCTAATGCTCCCTCGGAAGAAAGAAATCATAATGTATGCAAACATGACCGAATATCAGAAGAACTTTCAGGAACATTTAGTTAACAAGACATTGGAAAATCATCTCTCTGAGAAGGGATCAGGACATGGTTTTAAAGGAAAACTTAACAATCTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCTGATCTCTTGGAATCAGTCTTTGATGAATCCTATACGTATCCTCCTGTAGAGCAGCTAGTTGAGCAGTGTGGAAAATTTCGCTTACTGGATAGATTGTTGACACGGCTATTTGCACGCAAGCATAAAGTCCTTATTTTCTCGCAATGGACTAAGATTTTGGATATCATGGACTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATAGATGGTGGCGTGAAACTAGATGAAAGGAAAAGACAGATCCAGGAGTTCAATGATGTTAACAGCAGCCACAGGATATTTATTCTTAGTACCCGGGCTGGTGGTCTGGGTATCAACCTCACTGCAGCAGATACTTGTATACTCTATGATAGCGATTGGAACCCACAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATAGGTCAAACGAAACCTGTACACGTTTACAGACTTGCAACAGCTCAGTCTATAGAGGGCCGCATTCTGAAGAGGGCCTTTAGTAAGTTGAAGCTAGAGCATGTGGTCATTGAAAAGGGGCAATTTCACCAGGAACGAACAAAACCCAACCCTGGAGATATTGTAGAGGAAGAGGATCTACTAGCACTACTAAGAGAGGAAGATTCTGCTGAAGACAAGATGATACAGACAGACATTAGCGACGCTGATTTGGAGCGTATTTTAGACCGCTCTGATCTGATTGCCCCATCTGGTTCAGACAATGAGAAATCTAAAGTTTCTGGCGATTTATACCCTCTGAAAGGGCCTGGTTGGGAGGTGGTGACACCAACTTCAACAGGAGGGGTACTCTCTACCCTTAACTCTTAA 2484 41.83 MAKISSTSASRLPWRNTAREAMISPFTSLAIAPNSNVQLKTGLKFARFAIVHLVPSASGFSSSYLLSGLKMAVEEKPRADNSAESPTSVLEDEDLCNGEKEIKLEEEIILEAKNGDSSLISKEMAEEEQKLLEARVKEEEAKRLEDSTESAKLNDNQFTKLDELLTQTQLYSEFLLEKMDDITFNGVEEDKKSVEKSSGRGSKRKTAARYNNRKAKRAVAAMLTRSKEGERDEDVNLTEEERIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWINEISRFVPTMSAIIYHGDKKQREEIRRKSMPRTVGPKFPIVVTSYEIAMSDAKKFLRHYNWKYLVVDEGHRLKNSKCKLLKELKYIAVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSNEEFESWFDLSGKCHAEEKEETQENRKAQVVAKLHGILRPFLLRRMKSDVELMLPRKKEIIMYANMTEYQKNFQEHLVNKTLENHLSEKGSGHGFKGKLNNLMVQLRKNCNHPDLLESVFDESYTYPPVEQLVEQCGKFRLLDRLLTRLFARKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDVNSSHRIFILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRILKRAFSKLKLEHVVIEKGQFHQERTKPNPGDIVEEEDLLALLREEDSAEDKMIQTDISDADLERILDRSDLIAPSGSDNEKSKVSGDLYPLKGPGWEVVTPTSTGGVLSTLNS 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23074240 23086150 + CaPI482276_07g009390.1 Cam07g0939 131232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0939 827 Coils Coil 122 154 - -
Cam07g0939 827 Pfam Helicase conserved C-terminal domain 581 694 IPR001650 -
Cam07g0939 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 488 IPR027417 -
Cam07g0939 827 Gene3D - 494 795 IPR027417 -
Cam07g0939 827 FunFam ATP-dependent DNA helicase DDM1 253 497 - -
Cam07g0939 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 780 IPR027417 -
Cam07g0939 827 SMART helicmild6 610 694 IPR001650 -
Cam07g0939 827 CDD SF2_C_SNF 570 704 IPR049730 -
Cam07g0939 827 SMART ultradead3 255 450 IPR014001 -
Cam07g0939 827 Gene3D - 260 489 IPR038718 -
Cam07g0939 827 Pfam SNF2-related domain 262 558 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cam07g0939 827 FunFam Chromatin complex subunit A 106 498 725 - -
Cam07g0939 827 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 271 439 IPR014001 -
Cam07g0939 827 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 584 747 IPR001650 -
Cam07g0939 827 PANTHER SNF2/RAD54 HELICASE FAMILY 121 786 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0008094(PANTHER)|GO:0044030(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0939 K19001 - - csv:101214753 1390.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0602 Cam-Chr6:8174479 Cam07g0939 Cam-Chr7:23074240 2.70E-119 dispersed
Cam07g0114 Cam-Chr7:2337006 Cam07g0939 Cam-Chr7:23074240 2.70E-72 dispersed
Cam07g0939 Cam-Chr7:23074240 Cam10g1709 Cam-Chr10:31127382 8.80E-83 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52285 PF00176 SNF2_N 3.10E-64 CL0023 Cam TR