Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0956 ATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGTCGTCAGTCCCATCGGCAGCCCCACCTCCGGCAACATCTCCGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATTGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCGAACGCCAAAATCTCAAAAGAAGCGAAAGAGACCGTCCAGGAATGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCTGTCACCGGCGAAATCCGCCACCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATCCTGGGTTTTATTCATTGGGAAATCAAAATCAAAATCAGGGGAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGTTTCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA 678 47.79 MSGHKRNFTTTAAVVSPIGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSATEQIIGGKSANSVMDFQNFNPGFYSLGNQNQNQGNQKSFNIIDGVGFGESLRSFNMNGVHENGEGNRARAMAAHLQQSSGW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23435449 23436126 - CaPI482276_07g009560.1 Cam07g0956 131249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0956 225 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Cam07g0956 225 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Cam07g0956 225 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Cam07g0956 225 FunFam Nuclear transcription factor Y subunit B-3 26 149 - -
Cam07g0956 225 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g0956 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Cam07g0956 225 Coils Coil 113 133 - -
Cam07g0956 225 Gene3D Histone, subunit A 24 157 IPR009072 GO:0046982(InterPro)
Cam07g0956 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 172 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cam07g0956 225 MobiDBLite consensus disorder prediction 1 32 - -
Cam07g0956 225 SUPERFAMILY Histone-fold 34 136 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0911 Cam-Chr2:12679944 Cam07g0956 Cam-Chr7:23435449 1.60E-46 dispersed
Cam07g0956 Cam-Chr7:23435449 Cam10g0401 Cam-Chr10:6374111 4.60E-42 dispersed
Cam07g0956 Cam-Chr7:23435449 Cam02g1439 Cam-Chr2:27227124 4.30E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52287 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0956 K08065 - csv:101214273 411.379