Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g0987 ATGATGGTGGAGTTCCATGGAGAAATCCGAGACCCCAACGATGGTGAAGACCAAGAACATGAACAACAAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAAAGATCGACAAAGGTTGAAGAAGATGAAGGAGAAGCGTGATGATGAAGAGCCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGCCGTAAGAAAATGGCTAGAGCTCAAGATTCAATCCTCAAGTATATGGATAAGATCATGGAAGCTTGTAAGGCACAAGGGTTTGTTTATGGCATCGTCCCCGAAAAGGGTAAGCCCGTCACCGGCTCCTCCGAGAGCCTCCGTGAGTGGTGGCGGAATGACGTCCGATTCGAACAAGATGCTCCCATGGCCATAGCAAAATTCCTCCCCAAAGTAATCGAAGAATCAGGGCTCGATCCCAATTCGTTTTTGCACCTACTCACCGATTTACAGGACACAACATTAGGCTCCATTCTCTCTGCTCTGATGCAGCACTGTATTCCCCCGCAGAGGAAATTCCCACTGGAGAAGGGTTTAGCGCCACCGTGGTGGCCGACGGGTAACGAGCTTTGGTGGGGAGAACAGGGTCCCGCCGGTGGGCATGGTGTTCCGCCGTACAAAAAGCCCCACGACCTCAAAAAGGCTTGGAAAATCAGTGTCCTGGCGGCGGTGATCAAACACATGTCCCCTGATATGGACAACATGAGGAAATTAGTTCGGCAATCGAAGAATTTACAAGCAAAAATGACGGCAAAAGAGACGGTTACTTGGGCTAAGGTAGTGAATCAAGAAGAAGCCCTGTCACAATTAACCAAAAAAAAACTCAAAATCACACCCGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAACACGAGAAAAACAGAGGCGAACAGGTCACGGATGGAATTATGGAGAAACGAAAGTGCATATTCGAAGAAGAAGCTGTAGCCGATTCGACACTGTACCCTTGCCAGAATCAATGGTGCCCACAGAGCGAGGTGCTGATGGGATTCATGGACAAGAACGCAAGAACAGAGCATGAGACGCAGTGCATTTACAGAGGCGGGCAGACGGCGGAACAAGAACAATTCTCAGAGGAGCAGTCGATCGACACGCATTTGAAGAGCGTGGTGGATTGGATGAACTGGGAGTTATCAAGAGCAGAGCCGGGCAGCGACGAGGCAAGGATCGAAGATGCCGGAGACGGGTCGGGCAGCAGCACGGTGGAGGATTACTGGAATGGCGGCGCGGTGGAGGAGGCGTTTGAGATGCAGAGAAGGAGTATGGATTTGAATGCGAGTCCGGCGGAGGATTTGGGTGCCCAACAAGATGCCACTTCCATTTGGGATTTGAGATACGAATGGGCTGAGGAATGA 1407 49.82 MMVEFHGEIRDPNDGEDQEHEQQEEEISYDDLKKRMWKDRQRLKKMKEKRDDEEPESAAREEASRRKKMARAQDSILKYMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWRNDVRFEQDAPMAIAKFLPKVIEESGLDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGPAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDMDNMRKLVRQSKNLQAKMTAKETVTWAKVVNQEEALSQLTKKKLKITPDVEEEEEEEEEEEEEKEHEKNRGEQVTDGIMEKRKCIFEEEAVADSTLYPCQNQWCPQSEVLMGFMDKNARTEHETQCIYRGGQTAEQEQFSEEQSIDTHLKSVVDWMNWELSRAEPGSDEARIEDAGDGSGSSTVEDYWNGGAVEEAFEMQRRSMDLNASPAEDLGAQQDATSIWDLRYEWAEE 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24114301 24115707 + CaPI482276_07g009870.1 Cam07g0987 131280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g0987 468 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 13 397 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cam07g0987 468 MobiDBLite consensus disorder prediction 44 67 - -
Cam07g0987 468 Coils Coil 282 309 - -
Cam07g0987 468 MobiDBLite consensus disorder prediction 1 17 - -
Cam07g0987 468 MobiDBLite consensus disorder prediction 281 309 - -
Cam07g0987 468 SUPERFAMILY DNA-binding domain of EIN3-like 148 271 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cam07g0987 468 Coils Coil 29 49 - -
Cam07g0987 468 MobiDBLite consensus disorder prediction 398 419 - -
Cam07g0987 468 Pfam Ethylene insensitive 3, DNA-binding domain 30 269 IPR047091 GO:0003700(InterPro)
Cam07g0987 468 Gene3D - 142 278 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cam07g0987 468 Gene3D - 58 141 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cam07g0987 468 MobiDBLite consensus disorder prediction 1 67 - -
Cam07g0987 468 FunFam Ethylene insensitive 3-like 1 142 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g0987 K14514 - - csv:101210698 714.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0987 Cam-Chr7:24114301 Cam08g1308 Cam-Chr8:19379900 2.50E-82 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam03g1432 . 2 626 EIL Transcription Factor Family AT2G27050 58.2 1.2e-190 663.3
Cam08g1308 . 8 495 EIL Transcription Factor Family AT2G27050 62.8 2.4e-167 585.9
Cam03g1360 . 44 326 EIL Transcription Factor Family AT2G27050 62.5 4.9e-96 349.0
Cam03g1360 . 44 578 EIL Transcription Factor Family AT1G73730 54.7 7.8e-144 507.7
Cam03g1432 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.2e-105 378.3
Cam08g1308 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 2.3e-103 373.2
Cam07g0987 . 24 273 EIL Transcription Factor Family AT1G73730 54.9 1.2e-72 271.2
Cam03g1432 . 3 626 EIL Transcription Factor Family AT3G20770 62.5 1.7e-211 732.6
Cam08g1308 . 7 493 EIL Transcription Factor Family AT3G20770 62.9 2.5e-170 595.9
Cam03g1360 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.5e-98 357.5
Cam07g0987 . 19 371 EIL Transcription Factor Family AT5G65100 52.0 9.4e-97 351.3
Cam03g1360 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 4.4e-70 262.7
Cam07g0987 . 23 371 EIL Transcription Factor Family AT5G10120 54.2 2.1e-97 353.2
Cam03g1360 . 44 290 EIL Transcription Factor Family AT5G10120 55.2 6.1e-73 271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52292 PF04873 EIN3 3.30E-110 No_clan Cam TF