Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1020 ATGGCGACCGGCTTTCTGCTATCACTCTTCTTCTTCACTCCGCCATTAGGAGAGGTGACCCTTCATCTTCCAGCGATGAAACAGCGGCTTCGTTTTGGTTGCGCTGTCAGTTCCGAAACAATGTTCATCGATGGATCTATGTTTCTCTCTATCCCTTTTCTTGCTTTCTACTTAACCTTCTATTTCTACTCCCTCTCACAATCCCATGCCGGACGCTATCTGCTGCTTCTCCTTTGCATTCTGCAACGGAAGGTGAAACATGTTACAAGCAATGGAGAACAGGTACACGTAAAGACAGGAAAATCCAATGGTTTCCCTAATGGGAAGAGTGAAGATCTAGCTGCAACTCGAATTCAAAATGCATTTCGCGCATTTACGGCCAGAAAGGATGTACATAATTCGAAAGTGCCAGAGAGATGCCAGGATCTAATTCAAGGTGGAATGGCTACAAAACAAGTGTTAAGCTTCATTCATTCATGGAGCAGAATGCAGCAAGAAATTAGAGCACGTAGACTCTGTATGGTCACAGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGCTGAAGCTTGAGGCTAAAATTCATGAACTTGAGGCAGAATGGTGCGGTGGGTCCGAAACAAAGGAGGAAATACTTTTCAAGATTCAGCAACGAGAAGAAGCTGCTGTAAGACGGGAGCGGGCTATGGCTTATGCATTCTCTCATCAGTGGAGGGCCAATTCCATCTTAGATCTGAGCCCGGCTTCATACAGCCTTGATAAAGAAAACTGGGGATGGAGCTGGAAGGACAGATGGATTGCTGCTCGGCCATGGGAGATCCGAGCTAATACTCATCCCACCATTCCAAAGAAGGTGCAGACGAAACAAACAAGCAAACTCAATAAAGTGGCATATCAATCGGGGTCGAAGGTCTCAAACTTAGCCAGATATTCTTCGTCGAACAGCAAGGGGAGTTCAAAGGCCAGAAATTCTGCTATACCCAACAGCTGA 993 45.52 MATGFLLSLFFFTPPLGEVTLHLPAMKQRLRFGCAVSSETMFIDGSMFLSIPFLAFYLTFYFYSLSQSHAGRYLLLLLCILQRKVKHVTSNGEQVHVKTGKSNGFPNGKSEDLAATRIQNAFRAFTARKDVHNSKVPERCQDLIQGGMATKQVLSFIHSWSRMQQEIRARRLCMVTEYRVKQKKLENQLKLEAKIHELEAEWCGGSETKEEILFKIQQREEAAVRRERAMAYAFSHQWRANSILDLSPASYSLDKENWGWSWKDRWIAARPWEIRANTHPTIPKKVQTKQTSKLNKVAYQSGSKVSNLARYSSSNSKGSSKARNSAIPNS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24513221 24519398 + CaPI482276_07g010200.1 Cam07g1020 131313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1020 330 ProSiteProfiles IQ motif profile. 111 139 - -
Cam07g1020 330 MobiDBLite consensus disorder prediction 302 330 - -
Cam07g1020 330 Coils Coil 181 201 - -
Cam07g1020 330 PANTHER IQ-DOMAIN 5-RELATED 102 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1020 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2409 Cam-Chr1:36014360 Cam07g1020 Cam-Chr7:24513221 2.00E-55 dispersed
Cam07g1020 Cam-Chr7:24513221 Cam09g2081 Cam-Chr9:35375784 1.50E-25 dispersed
Cam07g1020 Cam-Chr7:24513221 Cam05g2284 Cam-Chr5:30951492 8.80E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g140 . . . . . . Bma10g00484 . Cmo16g00447 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1038 Cone15ag1024 . . . . Blo07g00960 . Bda05g00781 . . Bpe03g00849 . . . . . . Cma16g00415 . Car16g00380 Cpe14g00349 . . . . . . . . Cla07g00945 Cam07g1020 Cec07g1090 Cco07g1069 Clacu07g0989 Cmu07g0985 Cre07g1360 . . Chy07g00958 Cme07g01328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g2081 . 1 479 IQD Protein Family AT3G52290 54.2 2.3e-103 372.9
Cam03g1240 . 50 457 IQD Protein Family AT3G22190 57.8 3.2e-97 352.4
Cam05g1966 . 1 438 IQD Protein Family AT2G26180 61.8 9.1e-121 430.6
Cam01g2409 . 50 323 IQD Protein Family AT2G33990 52.5 2.5e-63 239.2
Cam07g1020 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cam01g2409 . 50 271 IQD Protein Family AT3G15050 50.9 1.9e-55 213.0
Cam07g1020 . 112 285 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Cam01g0768 . 111 463 IQD Protein Family AT5G13460 50.4 8.1e-75 278.1
Cam06g0278 . 1 509 IQD Protein Family AT4G00820 50.9 2.4e-113 406.4
Cam09g0023 . 1 402 IQD Protein Family AT3G16490 50.1 2.7e-66 249.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30