Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1022 ATGGCTTCAGTGCTGCAAGGTGGTGGTGATGCGGGAGGGAATCCCAGAAGGACGGATAATGAAAAGTTTAGTGCCGGAAAGCAACAGAAAGAGAGTAAAATTGTTAAACACGTAGCTCGAAATTCCGTTCAGACTCCTACTGTCGCGGCCACTAATGGCGGTGGTAATCCGTCTTCTCCTTCTCATAATCCGATCGATGCTTTAATCACGTCCAGGGATTCTTCGGGTCAAAATCGCTGCATTGAACCGGTTAATGCTGAGGACGTGCCAGGATACACGAGGTTTCAGAACCGGGTTAGGATTAGTTTGAATTCCAGATCGAGGTCTGGGATTAAAGAGCTTACGACGAAGCTGAAGGGTGAGCTTGATCAGGTTAGGAGCCTCGTGAAGAAGTTTGAAACTCAGGAGCTCCAGTTTAGTGGTTATGGTGGTGATGTTGGACATAGTCAGTCACAGTTTTCAGCTAATAATTTGGTAGAGAGGGCTGGTACTGTTAGTACAATGAAGGTTAATTCCGAGGTGGGTTCTGCAGATGTGCCTGCTTCGAGGCTTGTTCGATGTGTTTCGGTGGCAGAAAACTTTGGAGAGTTTGCAGAGAAAGAGATGAGCAAGCATAAAAATTCAAAATATATTTCTACAAAGGAGTTCCCGACGGATTGTAATTTGAATGGAGGTAAGATTGGTCCAGTGCTTAAAAGCTGTAGTAATTTGCTGGAAAGATTGATGAAACATAAATTTGGTTGGGTATTTAATGTGCCTGTTGATGCAAAGCGTTTGGGGCTTCACGATTATCATAAGATCATAAGGAAGCCAATGGATTTGGGTACCATAAAGATGAGACTAAATAAAAATTGGTACAAGTCACCAAGAGAGTTTGCTGAGGATGTGAGACTAACGTTTAGCAATGCCATTACATATAACCCAAAAGGGGAGGATGTTCATACAATGGCAGAGCAGTTGTCTAAGATATTCGAAGAGAAATGGAAGATAATTGAAGGCAAACAAAATGTTGGTAAGGGATTTCAGATGGATGATGGTTCAGTTTTACCTACACCCACCTCTAGGAAATCTCCAGCTCTTGCCACTCCTCCAGTGGAATCAAGAACTTTCAGTAGATCGGATTCTACGACAAAGCCTCCACCTTCAAATAGAGGGATTTTAGGTAAATCGGATTCAATAACAAAACCCCCCAATCCCAAACAGAACCCCACAGATGTTGCTCCTCCTGATAAGAAACCAAAAGCAAAGAATCACGAAATCAGAGATATGACTTATGAAGAAAAACAGAAACTGAGCATTGACCTTCAGGATTTACCATCAGATAAGCTGAATAATGTTGTCAAGATTATCAAGAAAAGAAACCAGGGACTCTTCCAAAACGACGATGAAATTGAGTTGGATATTGGCAGAGTCGATTCCGAAACCTTATGGGAACTTGAGAGGTTTGTGGCAAATCACAAAAGAAGTTTGATCAAGAATAAGAGAAAAGCCGACGCGAATCTTCAATCAGGAGAAAAATGGTCTCACTACTCGACCAATGATACTGATCTAGCAATGGCTAATGCAGGAGGAAAACCTGTAGGTGGCAATGCAGACTCTGAAAATGATAGTTCCTCGACATGTGGGGATGGAAATCAGTCTCCCTCAGTTAGGATTCGCAATGCTCACGTAATGATTCTTATTGTTCTATTATCTTCCAGCATCTACAGTGCATAA 1716 42.19 MASVLQGGGDAGGNPRRTDNEKFSAGKQQKESKIVKHVARNSVQTPTVAATNGGGNPSSPSHNPIDALITSRDSSGQNRCIEPVNAEDVPGYTRFQNRVRISLNSRSRSGIKELTTKLKGELDQVRSLVKKFETQELQFSGYGGDVGHSQSQFSANNLVERAGTVSTMKVNSEVGSADVPASRLVRCVSVAENFGEFAEKEMSKHKNSKYISTKEFPTDCNLNGGKIGPVLKSCSNLLERLMKHKFGWVFNVPVDAKRLGLHDYHKIIRKPMDLGTIKMRLNKNWYKSPREFAEDVRLTFSNAITYNPKGEDVHTMAEQLSKIFEEKWKIIEGKQNVGKGFQMDDGSVLPTPTSRKSPALATPPVESRTFSRSDSTTKPPPSNRGILGKSDSITKPPNPKQNPTDVAPPDKKPKAKNHEIRDMTYEEKQKLSIDLQDLPSDKLNNVVKIIKKRNQGLFQNDDEIELDIGRVDSETLWELERFVANHKRSLIKNKRKADANLQSGEKWSHYSTNDTDLAMANAGGKPVGGNADSENDSSSTCGDGNQSPSVRIRNAHVMILIVLLSSSIYSA 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24544137 24546588 + CaPI482276_07g010220.1 Cam07g1022 131315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1022 571 MobiDBLite consensus disorder prediction 531 548 - -
Cam07g1022 571 ProSiteProfiles NET domain profile. 413 494 IPR027353 -
Cam07g1022 571 PANTHER OSJNBA0053K19.4 PROTEIN 53 512 - -
Cam07g1022 571 MobiDBLite consensus disorder prediction 38 78 - -
Cam07g1022 571 SMART bromo_6 223 333 IPR001487 GO:0005515(InterPro)
Cam07g1022 571 Gene3D - 416 496 IPR038336 -
Cam07g1022 571 Pfam Bromodomain 234 318 IPR001487 GO:0005515(InterPro)
Cam07g1022 571 MobiDBLite consensus disorder prediction 15 37 - -
Cam07g1022 571 MobiDBLite consensus disorder prediction 1 78 - -
Cam07g1022 571 Pfam Bromodomain extra-terminal - transcription regulation 423 484 IPR027353 -
Cam07g1022 571 MobiDBLite consensus disorder prediction 339 421 - -
Cam07g1022 571 Gene3D - 204 343 IPR036427 GO:0005515(InterPro)
Cam07g1022 571 PRINTS Bromodomain signature 261 277 IPR001487 GO:0005515(InterPro)
Cam07g1022 571 PRINTS Bromodomain signature 277 295 IPR001487 GO:0005515(InterPro)
Cam07g1022 571 PRINTS Bromodomain signature 295 314 IPR001487 GO:0005515(InterPro)
Cam07g1022 571 PRINTS Bromodomain signature 245 258 IPR001487 GO:0005515(InterPro)
Cam07g1022 571 MobiDBLite consensus disorder prediction 407 421 - -
Cam07g1022 571 MobiDBLite consensus disorder prediction 347 400 - -
Cam07g1022 571 ProSiteProfiles Bromodomain profile. 242 314 IPR001487 GO:0005515(InterPro)
Cam07g1022 571 CDD Bromo_plant1 230 328 IPR037377 -
Cam07g1022 571 MobiDBLite consensus disorder prediction 517 548 - -
Cam07g1022 571 SUPERFAMILY Bromodomain 221 333 IPR036427 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1022 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1860 Cam-Chr2:31626669 Cam07g1022 Cam-Chr7:24544137 6.80E-83 dispersed
Cam07g1022 Cam-Chr7:24544137 Cam09g1118 Cam-Chr9:11592140 3.80E-85 dispersed
Cam01g2472 Cam-Chr1:36463366 Cam07g1022 Cam-Chr7:24544137 5.50E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g137 . . . . . . Bma10g00481 . Cmo16g00449 Cmo04g00605 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1035 Cone15ag1021 . . . . . . Bda05g00783 . . Bpe03g00850 . . . . . Cma04g00565 Cma16g00417 Car04g00536 Car16g00382 Cpe14g00351 Cpe01g00510 . . . . . . . Cla07g00947 Cam07g1022 Cec07g1092 Cco07g1071 Clacu07g0991 Cmu07g0987 Cre07g1362 . . Chy07g00961 Cme07g01330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003323 2 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 9 1 48