Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1025 ATGTTGAAGCAACTCTCTTTGGATCGACAAATTCATTCCGTCTTTCCGGTAGCATTGGCAGCTCTTCTCGTCGTAGGACTCGCTCGATTAGTCTTAGATGATCTCAAGAGTCATGGAAGCTTTGTGTTCAAAATGTATGGTCGACCGAGAAGCGAAAAGCATCGACTACCGGTTGTTGTCTCTCCGAAAGACCTCATAGATGAAAACTGCAATTTGTTTGAAGGGAAATGGGAATGGGACAATGCATCATATCCACTTTATGAAGAAGAGACATGTCCATTTTTGGTTAAACAAGTTACTTGCCAAAAGAATGGAAGACCTGATTCTTTCTATAAAAAATGGAGATGGCAACCTAATTCTTGCAATTTGCCAAGGTTTGATGCATTGAAATTGTTGGATATTTTGAGGGACAAAAGAATAATGTTTGTTGGGGATTCAATACAGAGAGGGCAGTTTGAATCAATGGTCTGCTTGGTTCAATCAGCCATTCCCAAAGGAAAGAAATCCCTTGAAAGAGTTCCTCCCAGGAAGATCTTCAAAGCTGAGGATTACAATGTATCAATTGAGTATTACTGGGCACCATTTATAGTTGAATCAATCTCTGATCATGCAACCAACCATACTGTGTTGAAAAGAATGGTGAAGCTTGATTCTATAGCCAACCATGGCAAGCACTGGAAAGGGGTTGATGTTTTGGTGTTTGAGAGCTATGTTTGGTGGAGATACAAACCCGTTATCAACGCCACGTATGGATCTCCAGAGGATGTAAGAGAGTATAATGTGAGCACAGCATATAGAATGGCAATGGAAACATGGGCAAATTGGCTAGAATCCAACATCAACCCTCACTCTCAGAAGGTCTTCTTCATGACAATGTCTCCAACACATTTGTGGAGCTGGGAATGGAGGGCAGGGAGTGATGAGAACTGCTTCAATGAGTCTCAACCAATTCACCATCCACACTGGGGAACTGGGTCAAGCACTGAGATAATGGAAATAATTCATGAAGTTATACAAGATCTCAAAGTAAATGTAACTTTATTAAACATTACACAGTTATCTGAGTTTCGAAAGGATGCTCATACATCGATTTACGGGGAGCGTCGAGGCAAGCTTTTGAGTAAAGAACAGAGATCTGATCCAAAAAATTTTGCAGATTGCATCCATTGGTGTTTGCCAGGAGTTCCTGATACATGGAATCAAATTTTGTATGCTCACTTGTTAAGAAACCATCAAAATCTTTCCTAG 1248 40.54 MLKQLSLDRQIHSVFPVALAALLVVGLARLVLDDLKSHGSFVFKMYGRPRSEKHRLPVVVSPKDLIDENCNLFEGKWEWDNASYPLYEEETCPFLVKQVTCQKNGRPDSFYKKWRWQPNSCNLPRFDALKLLDILRDKRIMFVGDSIQRGQFESMVCLVQSAIPKGKKSLERVPPRKIFKAEDYNVSIEYYWAPFIVESISDHATNHTVLKRMVKLDSIANHGKHWKGVDVLVFESYVWWRYKPVINATYGSPEDVREYNVSTAYRMAMETWANWLESNINPHSQKVFFMTMSPTHLWSWEWRAGSDENCFNESQPIHHPHWGTGSSTEIMEIIHEVIQDLKVNVTLLNITQLSEFRKDAHTSIYGERRGKLLSKEQRSDPKNFADCIHWCLPGVPDTWNQILYAHLLRNHQNLS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24572210 24575590 + CaPI482276_07g010250.1 Cam07g1025 131318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1025 415 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 25 407 IPR029962 GO:0005794(PANTHER)|GO:0016413(InterPro)|GO:0016413(PANTHER)
Cam07g1025 415 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 123 405 IPR026057 GO:0016740(InterPro)
Cam07g1025 415 Pfam PMR5 N terminal Domain 68 122 IPR025846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1025 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0710 Cam-Chr4:21419900 Cam07g1025 Cam-Chr7:24572210 9.00E-111 dispersed
Cam07g1025 Cam-Chr7:24572210 Cam11g0637 Cam-Chr11:7903812 1.00E-103 dispersed
Cam07g1025 Cam-Chr7:24572210 Cam07g1033 Cam-Chr7:24643862 2.60E-59 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g133 . . . . . . . Bma13g00934 Cmo16g00453 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1016 . . . . . . . . . . . . . . . . Cma16g00420 . Car16g00385 Cpe14g00355 . . . . . . . . Cla07g00950 Cam07g1025 Cec07g1095 Cco07g1074 Clacu07g0994 Cmu07g0990 Cre07g1365 . . Chy07g00964 Cme07g01334
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012140 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30